Evidence map›Paper›PMID 23999926›Full record

ArticleProteins2014

Global fold of human cannabinoid type 2 receptor probed by solid-state 13C-, 15N-MAS NMR and molecular dynamics simulations.

Tomohiro Kimura, Krishna Vukoti, Diane L Lynch, Dow P Hurst, Alan Grossfield, Michael C Pitman, Patricia H Reggio, Alexei A Yeliseev, Klaus Gawrisch

Open access · bronzeAbstract read
In one paragraph

Article in Proteins, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Special issue for Klaus Gawrisch.Biophysical journal · 2023
    Article
  4. Recombinant Expression and Purification of Cannabinoid Receptor CBMethods in molecular biology (Clifton, N.J.) · 2021
    Article
  5. Article
  6. Article
  7. Applications of NMR to membrane proteins.Archives of biochemistry and biophysics · 2017
    Review
  8. Article
  9. Article
  10. Membrane proteins in their native habitat as seen by solid-state NMR spectroscopy.Protein science : a publication of the Protein Society · 2015
    Review
  11. Article
  12. Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Tomohiro KimuraLaboratory of Membrane Biochemistry and Biophysics, NIAAA, NIH, Bethesda, Maryland, 20892.
Krishna Vukoti
Diane L Lynch
Dow P Hurst
Alan Grossfield
Michael C Pitman
Patricia H Reggio
Alexei A Yeliseev
Klaus Gawrisch
National Institutes of Health · USUniversity of North Carolina at Greensboro · USIBM (United States) · USUniversity of Rochester Medical Center · US

Funding

NMR Investigations Of Cell Membrane StructureZIAAA000003 · NIAAA · NATIONAL INSTITUTE ON ALCOHOL ABUSE AND ALCOHOLISM · PI GAWRISCH, KLAUS · 2009 to 2020
$23.2M
Molecular Determinants of Cannabinoid ActivityR01DA003934 · NIDA · UNIVERSITY OF NORTH CAROLINA GREENSBORO · PI REGGIO, PATRICIA HODAPP · 1985 to 2019
$5.6M
Multiscale modeling of G protein-coupled receptorsR01GM095496 · NIGMS · UNIVERSITY OF ROCHESTER · PI GROSSFIELD, ALAN · 2011 to 2015
$1.3M
Senior Scientist Award: Molecular Determinants for Cannabinoid ActivityK05DA021358 · NIDA · UNIVERSITY OF NORTH CAROLINA GREENSBORO · PI REGGIO, PATRICIA HODAPP · 2007 to 2016
$1.3M
Intramural NIH HHS ZIA AA000003NIDA NIH HHS K05 DA021358NIDA NIH HHS KO5 DA021358NIDA NIH HHS R01 DA003934NIGMS NIH HHS R01 GM095496
6 · The paper itself

Abstract

The global fold of human cannabinoid type 2 (CB2 ) receptor in the agonist-bound active state in lipid bilayers was investigated by solid-state (13)C- and (15)N magic-angle spinning (MAS) NMR, in combination with chemical-shift prediction from a structural model of the receptor obtained by microsecond-long molecular dynamics (MD) simulations. Uniformly (13)C- and (15)N-labeled CB2 receptor was expressed in milligram quantities by bacterial fermentation, purified, and functionally reconstituted into liposomes. (13)C MAS NMR spectra were recorded without sensitivity enhancement for direct comparison of Cα, Cβ, and C=O bands of superimposed resonances with predictions from protein structures generated by MD. The experimental NMR spectra matched the calculated spectra reasonably well indicating agreement of the global fold of the protein between experiment and simulations. In particular, the (13) C chemical shift distribution of Cα resonances was shown to be very sensitive to both the primary amino acid sequence and the secondary structure of CB2. Thus the shape of the Cα band can be used as an indicator of CB2 global fold. The prediction from MD simulations indicated that upon receptor activation a rather limited number of amino acid residues, mainly located in the extracellular Loop 2 and the second half of intracellular Loop 3, change their chemical shifts significantly (≥ 1.5 ppm for carbons and ≥ 5.0 ppm for nitrogens). Simulated two-dimensional (13) Cα(i)-(13)C=O(i) and (13)C=O(i)-(15)NH(i + 1) dipolar-interaction correlation spectra provide guidance for selective amino acid labeling and signal assignment schemes to study the molecular mechanism of activation of CB2 by solid-state MAS NMR.

Indexed as

Molecular Dynamics SimulationCarbon IsotopesEscherichia coliHumansLiposomesNitrogen IsotopesNuclear Magnetic Resonance, BiomolecularProtein FoldingReceptor, Cannabinoid, CB2Recombinant ProteinsCarbon IsotopesLiposomesNitrogen IsotopesReceptor, Cannabinoid, CB2Recombinant Proteinscannabinoid receptorCB2GPCRG protein-coupled receptormolecular dynamics simulationsolid-state NMR

Identifiers

PMID23999926
PMCPMC4071771
OpenAlexW2141336956

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.