Evidence map›Paper›PMID 23999079›Full record

ReviewTrends in cell biology2014

The beginning of the end: how scaffolds nucleate autophagosome biogenesis.

Robin E Stanley, Michael J Ragusa, James H Hurley

Open access · greenAbstract readReview
In one paragraph

Review in Trends in cell biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 83 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Review
  5. Review
  6. RNABMC genomics · 2021
    Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. The autophagy-related geneThe Journal of biological chemistry · 2019
    Article
  15. Article
  16. Article
  17. Human Papilloma Virus and Autophagy.International journal of molecular sciences · 2018
    Review
  18. Anatomy of autophagy: from the beginning to the end.Cellular and molecular life sciences : CMLS · 2018
    Review
  19. Review
  20. Structure and function of yeast Atg20, a sorting nexin that facilitates autophagy induction.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Robin E StanleyLaboratory of Molecular Biology, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892, USA.
Michael J RagusaLaboratory of Molecular Biology, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892, USA; Department of Molecular and Cell Biology, California Institute for Quantitative Biosciences, University of California, Berkeley, CA 94720, USA.
James H HurleyDepartment of Molecular and Cell Biology, California Institute for Quantitative Biosciences, University of California, Berkeley, CA 94720, USA. Electronic address: jimhurley@berkeley.edu.
University of California, Berkeley · USNational Institutes of Health · US

Funding

Structural mechanisms of autophagyZIADK075067 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI HURLEY, JAMES · 2012 to 2013
$1.8M
The molecular basis for the induction of autophagyF32GM099319 · NIGMS · U.S. NATIONAL INST DIABETES/DIGST/KIDNEY · PI RAGUSA, MICHAEL JOSEPH · 2011 to 2013
$146k
Intramural NIH HHS ZIA DK075067NIGMS NIH HHS F32 GM099319NIGMS NIH HHS GM099319
6 · The paper itself

Abstract

Autophagy is a conserved mechanism that is essential for cell survival in starvation. Moreover, autophagy maintains cellular health by clearing unneeded or harmful materials from cells. Autophagy proceeds by the engulfment of bulk cytosol and organelles by a cup-shaped double-membrane sheet known as the phagophore. The phagophore closes on itself to form the autophagosome, which delivers its contents to the vacuole or lysosome for degradation. A multiprotein complex comprising the protein kinase autophagy-related protein 1 (Atg1) together with Atg13, Atg17, Atg29, and Atg31 (ULK1, ATG13, FIP200, and ATG101 in humans) has a pivotal role in the earliest steps of this process. This review summarizes recent structural and ultrastructural analysis of the earliest step in autophagosome biogenesis and discusses a model in which the Atg1 complex clusters high-curvature vesicles containing the integral membrane protein Atg9, thereby initiating the phagophore.

Indexed as

AutophagyAdaptor Proteins, Vesicular TransportAnimalsBiological TransportHumansMembrane FusionPhagosomesTransport VesiclesVacuolesAdaptor Proteins, Vesicular TransportAtg1Atg13Atg9autophagymembrane bendingSNAREsULK1vesicle tethering

Identifiers

PMID23999079
PMCPMC3877172
OpenAlexW1968944344

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.