Evidence map›Paper›PMID 23998201›Full record

ArticleJournal of biomolecular structure & dynamics2014

Preventing the return of smallpox: molecular modeling studies on thymidylate kinase from Variola virus.

Ana Paula Guimarães, Teodorico Castro Ramalho, Tanos Celmar Costa França

Open access · bronzeAbstract read
In one paragraph

Article in Journal of biomolecular structure & dynamics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.5field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 20 citations in OpenAlex.

  1. Exploring the Dynamics ofCurrent medicinal chemistry · 2025
    Article
  2. Review
  3. Article
  4. Article
  5. Design of inhibitors of thymidylate kinase fromJournal of biomolecular structure & dynamics · 2019
    Article
  6. Article
  7. A novel viral thymidylate kinase with dual kinase activity.Journal of bioenergetics and biomembranes · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Ana Paula Guimarãesa Laboratory of Molecular Modeling Applied to Chemical and Biological Defense (LMACBD) , Military Institute of Engineering , Praça General Tibúrcio 80, Rio de Janeiro , 22290-270 , Brazil .
Teodorico Castro Ramalho
Tanos Celmar Costa França
Military Institute of Engineering · BRUniversidade Federal de Lavras · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Smallpox was one of the most devastating diseases in the human history and still represents a serious menace today due to its potential use by bioterrorists. Considering this threat and the non-existence of effective chemotherapy, we propose the enzyme thymidylate kinase from Variola virus (VarTMPK) as a potential target to the drug design against smallpox. We first built a homology model for VarTMPK and performed molecular docking studies on it in order to investigate the interactions with inhibitors of Vaccinia virus TMPK (VacTMPK). Subsequently, molecular dynamics (MD) simulations of these compounds inside VarTMPK and human TMPK (HssTMPK) were carried out in order to select the most promising and selective compounds as leads for the design of potential VarTMPK inhibitors. Results of the docking and MD simulations corroborated to each other, suggesting selectivity towards VarTMPK and, also, a good correlation with the experimental data.

Indexed as

Models, MolecularAmino AcidsAmino Acid SequenceBinding SitesBromodeoxyuridineHumansHydrogen BondingHydrophobic and Hydrophilic InteractionsMolecular Docking SimulationMolecular Sequence DataNucleoside-Phosphate KinaseProtein Kinase InhibitorsSequence AlignmentSequence Homology, Amino AcidSmallpoxThermodynamicsAmino AcidsBromodeoxyuridinedTMP kinaseNucleoside-Phosphate KinaseProtein Kinase Inhibitorsdockingmolecular dynamicssmallpoxthymidylate kinaseVariola virus

Identifiers

PMID23998201
PMCPMC9491126
OpenAlexW1988860076

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.