Evidence map›Paper›PMID 23995841›Full record

ArticleThe Journal of biological chemistry2013

Characterization of a highly efficient blue-shifted channelrhodopsin from the marine alga Platymonas subcordiformis.

Elena G Govorunova, Oleg A Sineshchekov, Hai Li, Roger Janz, John L Spudich

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
4.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 114 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Blue-shifted ancyromonad channelrhodopsins for multiplex optogenetics.bioRxiv : the preprint server for biology · 2025
    Article
  7. Article
  8. Review
  9. Sensing a rainbow of colors: algal photoreceptors.Frontiers in plant science · 2025
    Review
  10. Article
  11. Review
  12. An Innovative Mitochondrial-targeted Gene Therapy for Cancer Treatment.bioRxiv : the preprint server for biology · 2024
    Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Potassium-selective channelrhodopsins.Biophysics and physicobiology · 2023
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Elena G GovorunovaFrom the Department of Biochemistry & Molecular Biology, Center for Membrane Biology and.
Oleg A Sineshchekov
Hai Li
Roger Janz
John L Spudich
Laboratoire de Biologie Physico-Chimique des Protéines Membranaires · FRThe University of Texas at Austin · US

Funding

Structure/Function of Microbial Sensory RhodopsinsR01GM027750 · NIGMS · YESHIVA UNIVERSITY · PI SPUDICH, JOHN LEE · 1985 to 2020
$6.6M
Channelrhodopsin-Calcium Channel Complexes for Ultrasensitive OptogeneticsR21MH098288 · NIMH · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI SINESHCHEKOV, OLEG A, SPUDICH, JOHN LEE · 2012 to 2013
$410k
NIGMS NIH HHS R01 GM027750NIGMS NIH HHS R01GM027750NIMH NIH HHS R21 MH098288NIMH NIH HHS R21MH098288
6 · The paper itself

Abstract

Rhodopsin photosensors of phototactic algae act as light-gated cation channels when expressed in animal cells. These proteins (channelrhodopsins) are extensively used for millisecond scale photocontrol of cellular functions (optogenetics). We report characterization of PsChR, one of the phototaxis receptors in the alga Platymonas (Tetraselmis) subcordiformis. PsChR exhibited ∼3-fold higher unitary conductance and greater relative permeability for Na(+) ions, as compared with the most frequently used channelrhodopsin-2 from Chlamydomonas reinhardtii (CrChR2). Photocurrents generated by PsChR in HEK293 cells showed lesser inactivation and faster peak recovery than those by CrChR2. Their maximal spectral sensitivity was at 445 nm, making PsChR the most blue-shifted channelrhodopsin so far identified. The λmax of detergent-purified PsChR was 437 nm at neutral pH and exhibited red shifts (pKa values at 6.6 and 3.8) upon acidification. The purified pigment undergoes a photocycle with a prominent red-shifted intermediate whose formation and decay kinetics match the kinetics of channel opening and closing. The rise and decay of an M-like intermediate prior to formation of this putative conductive state were faster than in CrChR2. PsChR mediated sufficient light-induced membrane depolarization in cultured hippocampal neurons to trigger reliable repetitive spiking at the upper threshold frequency of the neurons. At low frequencies spiking probability decreases less with PsChR than with CrChR2 because of the faster recovery of the former. Its blue-shifted absorption enables optogenetics at wavelengths even below 400 nm. A combination of characteristics makes PsChR important for further research on structure-function relationships in ChRs and potentially useful for optogenetics, especially for combinatorial applications when short wavelength excitation is required.

Indexed as

Algal ProteinsAnimalsCells, CulturedChlamydomonas reinhardtiiChlorophytaHEK293 CellsHumansHydrogen-Ion ConcentrationIon ChannelsIon TransportLightMarine BiologyMembrane PotentialsNeuronsRatsRats, Sprague-DawleyAlgal ProteinsIon ChannelsRhodopsinSodiumAlgaeChannelrhodopsinIon ChannelsOptogeneticsPhotobiologyPhotoreceptorsPhototaxis

Identifiers

PMID23995841
PMCPMC3795289
OpenAlexW1968604225

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.