Evidence map›Paper›PMID 23995840›Full record

ArticleThe Journal of biological chemistry2013

Regulation of the structurally dynamic N-terminal domain of progesterone receptor by protein-induced folding.

Raj Kumar, Carmen M Moure, Shagufta H Khan, Celetta Callaway, Sandra L Grimm, Devrishi Goswami, Patrick R Griffin, Dean P Edwards

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 53 citations in OpenAlex.

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  10. NFAT5, which protects against hypertonicity, is activated by that stress via structuring of its intrinsically disordered domain.Proceedings of the National Academy of Sciences of the United States of America · 2020
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  15. Ensemble allosteric model: energetic frustration within the intrinsically disordered glucocorticoid receptor.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2018
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Raj Kumarthe Department of Basic Sciences, Commonwealth Medical College, Scranton, Pennsylvania 18509.
Carmen M MoureFrom the Departments of Molecular and Cellular Biology and.
Shagufta H Khanthe Department of Basic Sciences, Commonwealth Medical College, Scranton, Pennsylvania 18509.
Celetta CallawayFrom the Departments of Molecular and Cellular Biology and.
Sandra L GrimmFrom the Departments of Molecular and Cellular Biology and.
Devrishi Goswamithe Department of Molecular Therapeutics, The Scripps Research Institute, Jupiter, Florida 33458, and.
Patrick R Griffinthe Department of Molecular Therapeutics, The Scripps Research Institute, Jupiter, Florida 33458, and.
Dean P EdwardsFrom the Departments of Molecular and Cellular Biology and; Pathology and Immunology, Baylor College of Medicine, Houston, Texas 77030,. Electronic address: deane@bcm.edu.
Commonwealth Medical College · USScripps Research Institute · USBaylor College of Medicine · US

Funding

UHTS Implementation(Florida)U54MH084512 · NIMH · SCRIPPS RESEARCH INSTITUTE, THE · PI DING, SHENG · 2008 to 2013
$89.2M
Tumor BiologyP30CA125123 · NCI · BAYLOR COLLEGE OF MEDICINE · PI Michael M Ittmann · 2007 to 2026
$73.9M
PROGESTERONE RECEPTOR INTERACTIONR01CA046938 · NCI · UNIVERSITY OF COLORADO DENVER · PI EDWARDS, DEAN P · 1988 to 2013
$3.3M
Development of H/D exchange technology for the study of large protein complexesR01GM084041 · NIGMS · SCRIPPS FLORIDA · PI GRIFFIN, PATRICK ROBERT · 2009 to 2012
$1.6M
Acquisition of a LTQ/Orbitrap MS to advance the study of protein dynamicsS10RR027270 · NCRR · SCRIPPS RESEARCH INSTITUTE, THE · PI GRIFFIN, PATRICK ROBERT · 2010 to 2010
$500k
NCI NIH HHS P30 CA125123NCI NIH HHS P30 NCI-CA125123NCI NIH HHS R01 CA046938NCI NIH HHS R01CA046938NCRR NIH HHS S10 RR027270NIGMS NIH HHS GM084041NIGMS NIH HHS R01 GM084041NIMH NIH HHS U54 MH084512
6 · The paper itself

Abstract

The N-terminal domain (NTD) of steroid receptors harbors a transcriptional activation function (AF1) that is composed of an intrinsically disordered polypeptide. We examined the interaction of the TATA-binding protein (TBP) with the NTD of the progesterone receptor (PR) and its ability to regulate AF1 activity through coupled folding and binding. As assessed by solution phase biophysical methods, the isolated NTD of PR contains a large content of random coil, and it is capable of adopting secondary α-helical structure and more stable tertiary folding either in the presence of the natural osmolyte trimethylamine-N-oxide or through a direct interaction with TBP. Hydrogen-deuterium exchange coupled with mass spectrometry confirmed the highly dynamic intrinsically disordered property of the NTD within the context of full-length PR. Deletion mapping and point mutagenesis defined a region of the NTD (amino acids 350-428) required for structural folding in response to TBP interaction. Overexpression of TBP in cells enhanced transcriptional activity mediated by the PR NTD, and deletion mutations showed that a region (amino acids 327-428), similar to that required for TBP-induced folding, was required for functional response. TBP also increased steroid receptor co-activator 1 (SRC-1) interaction with the PR NTD and cooperated with SRC-1 to stimulate NTD-dependent transcriptional activity. These data suggest that TBP can mediate structural reorganization of the NTD to facilitate the binding of co-activators required for maximal transcriptional activation.

Indexed as

Protein FoldingAmino Acid SequenceAnimalsCell LineHumansNuclear Receptor Coactivator 1Point MutationProtein Structure, SecondaryProtein Structure, TertiaryReceptors, ProgesteroneSequence DeletionTATA-Box Binding ProteinTranscriptional ActivationNCOA1 protein, humanNuclear Receptor Coactivator 1Receptors, ProgesteroneTATA-Box Binding ProteinTBP protein, humanHydrogen Deuterium Exchange MassIntrinsically Disordered ProteinsMass Spectrometry (MS)N-terminal Transcription Activation domain AF1ProgesteroneProgesterone ReceptorProtein FoldingSteroid Hormone ReceptorTATA-binding Protein

Identifiers

PMID23995840
PMCPMC3798494
OpenAlexW2144761756

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.