Evidence map›Paper›PMID 23995691›Full record

ArticleNature2013

A statin-dependent QTL for GATM expression is associated with statin-induced myopathy.

Lara M Mangravite, Barbara E Engelhardt, Marisa W Medina, Joshua D Smith, Christopher D Brown, Daniel I Chasman, Brigham H Mecham, Bryan Howie, Heejung Shim, Devesh Naidoo and 13 more

Abstract read
In one paragraph

Article in Nature, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 124 papers, 12 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
124citing papers in PubMed, 12 pooled it
16.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

124 citing papers in PubMed, 12 syntheses or guidelines pooled it, 233 citations in OpenAlex.

  1. Pooled it
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  7. A comprehensive review and meta-analysis of risk factors for statin-induced myopathy.European journal of clinical pharmacology · 2018 · on this map
    Pooled it
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  10. Genetic factors affecting statin concentrations and subsequent myopathy: a HuGENet systematic review.Genetics in medicine : official journal of the American College of Medical Genetics · 2014
    Pooled it
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  13. Trial
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  15. Article
  16. Polygenic risk scores in pharmacogenomics: methodological challenges, current applications, and perspectives for clinical implementation.Medizinische Genetik : Mitteilungsblatt des Berufsverbandes Medizinische Genetik e.V · 2026
    Article
  17. Article
  18. Article
  19. Review
  20. Mechanisms of Homoarginine: Looking Beyond Clinical Outcomes.Acta physiologica (Oxford, England) · 2025
    Review

64 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

23 authors at 12 institutions in 2 countries.

Lara M MangraviteSage Bionetworks, 1100 Fairview Avenue North, Seattle, Washington 98109, USA. lara.mangravite@sagebase.org
Barbara E Engelhardt
Marisa W Medina
Joshua D Smith
Christopher D Brown
Daniel I Chasman
Brigham H Mecham
Bryan Howie
Heejung Shim
Devesh Naidoo
QiPing Feng
Mark J Rieder
Yii-Der I Chen
Jerome I Rotter
Paul M Ridker
Jemma C Hopewell
Sarah Parish
Jane Armitage
Rory Collins
Russell A Wilke
Deborah A Nickerson
Matthew Stephens
Ronald M Krauss
University of Oxford · GBUniversity of Chicago · USBrigham and Women's Hospital · USUniversity of Washington · USVanderbilt University Medical Center · USDuke University · USHarbor–UCLA Medical Center · USNorth Seattle College · USSage Bionetworks · USSouth University · USThe Lundquist Institute · USUniversity of Pennsylvania · US

Funding

UCLA Clinical and Translational Science InstituteUL1TR000124 · NCATS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DUBINETT, STEVEN M. · 2012 to 2015
$57.0M
Transgenic & Knock-out MouseP30DK063491 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Andrea L Hevener · 2003 to 2026
$40.4M
Pharmacogenomics and Risk of Cardiovascular DiseaseU01HL069757 · NHLBI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI KRAUSS, RONALD M · 2001 to 2009
$24.7M
Genome analysis: statistical methods and applicationsR01HG002585 · NHGRI · UNIVERSITY OF WASHINGTON · PI MATTHEW STEPHENS · 2002 to 2026
$8.4M
Alternative Splicing in Regulation of Cholesterol Synthesis and UptakeR01HL104133 · NHLBI · CHILDREN'S HOSPITAL & RES CTR AT OAKLAND · PI MEDINA, MARISA WONG · 2010 to 2014
$2.0M
Statistical models to investigate long-distance QTL transcription regulationR00HG006265 · NHGRI · PRINCETON UNIVERSITY · PI ENGELHARDT, BARBARA · 2012 to 2014
$747k
Genome analysis: statistical methods and applicationsR56HG002585 · NHGRI · UNIVERSITY OF CHICAGO · PI STEPHENS, MATTHEW · 2023 to 2023
$292k
Statistical models to investigate long-distance QTL transcription regulationK99HG006265 · NHGRI · UNIVERSITY OF CHICAGO · PI ENGELHARDT, BARBARA · 2011 to 2011
$90k
British Heart FoundationMedical Research Council MC_U137686853NCATS NIH HHS UL1 TR000124NHGRI NIH HHS HG002585NHGRI NIH HHS K99 HG006265NHGRI NIH HHS K99/R00HG006265NHGRI NIH HHS R00 HG006265NHGRI NIH HHS R01 HG002585NHGRI NIH HHS R56 HG002585NHLBI NIH HHS R01 HL104133NHLBI NIH HHS U01 HL069757NHLBI NIH HHS U01 HL69757NIDDK NIH HHS P30 DK063491
6 · The paper itself

Abstract

Statins are prescribed widely to lower plasma low-density lipoprotein (LDL) concentrations and cardiovascular disease risk and have been shown to have beneficial effects in a broad range of patients. However, statins are associated with an increased risk, albeit small, of clinical myopathy and type 2 diabetes. Despite evidence for substantial genetic influence on LDL concentrations, pharmacogenomic trials have failed to identify genetic variations with large effects on either statin efficacy or toxicity, and have produced little information regarding mechanisms that modulate statin response. Here we identify a downstream target of statin treatment by screening for the effects of in vitro statin exposure on genetic associations with gene expression levels in lymphoblastoid cell lines derived from 480 participants of a clinical trial of simvastatin treatment. This analysis identified six expression quantitative trait loci (eQTLs) that interacted with simvastatin exposure, including rs9806699, a cis-eQTL for the gene glycine amidinotransferase (GATM) that encodes the rate-limiting enzyme in creatine synthesis. We found this locus to be associated with incidence of statin-induced myotoxicity in two separate populations (meta-analysis odds ratio = 0.60). Furthermore, we found that GATM knockdown in hepatocyte-derived cell lines attenuated transcriptional response to sterol depletion, demonstrating that GATM may act as a functional link between statin-mediated lowering of cholesterol and susceptibility to statin-induced myopathy.

Indexed as

AmidinotransferasesCell LineCholesterolGene Expression RegulationGene Knockdown TechniquesHumansHydroxymethylglutaryl-CoA Reductase InhibitorsLymphocytesMuscular DiseasesPolymorphism, Single NucleotideQuantitative Trait LociSimvastatinSterol Regulatory Element Binding ProteinsTranscription, GeneticAmidinotransferasesCholesterolglycine amidinotransferaseHydroxymethylglutaryl-CoA Reductase InhibitorsSimvastatinSterol Regulatory Element Binding Proteins

Identifiers

PMID23995691
PMCPMC3933266
OpenAlexW1985629708

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.