Evidence map›Paper›PMID 23995389›Full record

ArticleNature methods2013

Engineering the Caenorhabditis elegans genome using Cas9-triggered homologous recombination.

Daniel J Dickinson, Jordan D Ward, David J Reiner, Bob Goldstein

Abstract read
In one paragraph

Article in Nature methods, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 618 papers.

0numbers the graph read from it
0cells of the map it votes in
618citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

618 citing papers in PubMed.

  1. Article
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  4. Review
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  7. A pilot study for whole proteome tagging inbioRxiv : the preprint server for biology · 2026
    Article
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  9. Article
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  11. Article
  12. Review
  13. Article
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  19. TAG-IN, a swappable strategy for endogenous gene tagging inbioRxiv : the preprint server for biology · 2026
    Article
  20. Article

558 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Daniel J Dickinson1] Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA. [2] Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.
Jordan D Ward
David J Reiner
Bob Goldstein

Funding

Integrated Training in Cancer Model SystemsT32CA009156 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DER, CHANNING J. · 1985 to 2020
$19.7M
GENE REGULATION BY STEROID RECEPTOR PROTEINSR01CA020535 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI YAMAMOTO, KEITH ROBERT · 1985 to 2018
$8.9M
Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
Mechanisms of C. elegans GastrulationR01GM083071 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI GOLDSTEIN, ROBERT P · 2008 to 2019
$3.7M
The Ral small GTPase in C. elegans developmentR01GM085309 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI REINER, DAVID · 2010 to 2014
$1.4M
GENE REGULATION BY STEROID RECEPTOR PROTEINSR37CA020535 · NCI · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI YAMAMOTO, KEITH ROBERT · 1990 to 1998
–
CIHR 234765Howard Hughes Medical InstituteNCI NIH HHS CA20535NCI NIH HHS R01 CA020535NCI NIH HHS R37 CA020535NCI NIH HHS T32 CA009156NIGMS NIH HHS R01 GM083071NIGMS NIH HHS R01 GM085309NIH HHS P40 OD010440
6 · The paper itself

Abstract

Study of the nematode Caenorhabditis elegans has provided important insights in a wide range of fields in biology. The ability to precisely modify genomes is critical to fully realize the utility of model organisms. Here we report a method to edit the C. elegans genome using the clustered, regularly interspersed, short palindromic repeats (CRISPR) RNA-guided Cas9 nuclease and homologous recombination. We demonstrate that Cas9 is able to induce DNA double-strand breaks with specificity for targeted sites and that these breaks can be repaired efficiently by homologous recombination. By supplying engineered homologous repair templates, we generated gfp knock-ins and targeted mutations. Together our results outline a flexible methodology to produce essentially any desired modification in the C. elegans genome quickly and at low cost. This technology is an important addition to the array of genetic techniques already available in this experimentally tractable model organism.

Indexed as

Clustered Regularly Interspaced Short Palindromic RepeatsGenome, HelminthRecombinational DNA RepairAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsDNA Breaks, Double-StrandedGene Knock-In TechniquesPoint MutationProtein EngineeringRecombinant Fusion ProteinsRibonucleasesCaenorhabditis elegans ProteinsRecombinant Fusion ProteinsRibonucleases

Identifiers

PMID23995389
PMCPMC3905680

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.