Evidence map›Paper›PMID 23995136›Full record

ArticleNature genetics2013

Evolution of high-level ethambutol-resistant tuberculosis through interacting mutations in decaprenylphosphoryl-β-D-arabinose biosynthetic and utilization pathway genes.

Hassan Safi, Subramanya Lingaraju, Anita Amin, Soyeon Kim, Marcus Jones, Michael Holmes, Michael McNeil, Scott N Peterson, Delphi Chatterjee, Robert Fleischmann and 1 more

Open access · greenAbstract read
In one paragraph

Article in Nature genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 111 papers.

0numbers the graph read from it
0cells of the map it votes in
111citing papers in PubMed
9.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

111 citing papers in PubMed, 203 citations in OpenAlex.

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  13. Predicting Drug Resistance inDiagnostics (Basel, Switzerland) · 2025
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  14. Review
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  19. Review
  20. Review

51 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Hassan Safi1] Division of Infectious Disease, New Jersey Medical School, Rutgers University, Newark, New Jersey, USA. [2] Center for Emerging and Re-emerging Pathogens, New Jersey Medical School, Rutgers University, Newark, New Jersey, USA. [3] Department of Medicine, New Jersey Medical School, Rutgers University, Newark, New Jersey, USA.
Subramanya Lingaraju
Anita Amin
Soyeon Kim
Marcus Jones
Michael Holmes
Michael McNeil
Scott N Peterson
Delphi Chatterjee
Robert Fleischmann
David Alland
J. Craig Venter Institute · USRutgers, The State University of New Jersey · USColorado State University · US

Funding

US-Brazil Research Collaboration on Strain Variation in TBU01AI065663 · NIAID · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI ELLNER, JERROLD J. · 2005 to 2015
$5.2M
Rapid Diagnosis of XDR TuberculosisR01AI080653 · NIAID · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI ALLAND, DAVID · 2009 to 2013
$2.8M
TB LAM AND AG--STRUCTURES CORRELATED WITH BIOLOGYR01AI037139 · NIAID · COLORADO STATE UNIVERSITY-FORT COLLINS · PI CHATTERJEE, DELPHI · 1996 to 2008
$1.5M
Structure of LAM in Relation to Biology and BiosynthesisR21AI037139 · NIAID · COLORADO STATE UNIVERSITY-FORT COLLINS · PI CHATTERJEE, DELPHI · 2002 to 2002
$244k
NIAID NIH HHS AI037139NIAID NIH HHS AI065663NIAID NIH HHS AI080653NIAID NIH HHS N01-AI5447NIAID NIH HHS R01 AI037139NIAID NIH HHS R01 AI080653NIAID NIH HHS R21 AI037139NIAID NIH HHS U01 AI065663
6 · The paper itself

Abstract

To study the evolution of drug resistance, we genetically and biochemically characterized Mycobacterium tuberculosis strains selected in vitro for ethambutol resistance. Mutations in decaprenylphosphoryl-β-D-arabinose (DPA) biosynthetic and utilization pathway genes Rv3806c, Rv3792, embB and embC accumulated to produce a wide range of ethambutol minimal inhibitory concentrations (MICs) that depended on mutation type and number. Rv3806c mutations increased DPA synthesis, causing MICs to double from 2 to 4 μg/ml in a wild-type background and to increase from 16 to 32 μg/ml in an embB codon 306 mutant background. Synonymous mutations in Rv3792 increased the expression of downstream embC, an ethambutol target, resulting in MICs of 8 μg/ml. Multistep selection was required for high-level resistance. Mutations in embC or very high embC expression were observed at the highest resistance level. In clinical isolates, Rv3806c mutations were associated with high-level resistance and had multiplicative effects with embB mutations on MICs. Ethambutol resistance is acquired through the acquisition of mutations that interact in complex ways to produce a range of MICs, from those falling below breakpoint values to ones representing high-level resistance.

Indexed as

Evolution, MolecularMutationAntitubercular AgentsArabinoseDrug Resistance, MicrobialEthambutolMicrobial Sensitivity TestsMycobacterium tuberculosisAntitubercular AgentsArabinoseEthambutol

Identifiers

PMID23995136
PMCPMC6103293
OpenAlexW1989425393

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.