Evidence map›Paper›PMID 23993951›Full record

ArticleExperimental hematology2013

Transcriptional environment and chromatin architecture interplay dictates globin expression patterns of heterospecific hybrids derived from undifferentiated human embryonic stem cells or from their erythroid progeny.

Kai-Hsin Chang, Andy Huang, Hemei Han, Yi Jiang, Xiangdong Fang, Chao-Zhong Song, Steve Padilla, Hao Wang, Hongzhu Qu, John Stamatoyannopoulos and 2 more

Open access · greenAbstract read
In one paragraph

Article in Experimental hematology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 89% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Kai-Hsin ChangDivision of Hematology, Department of Medicine, University of Washington, Seattle, WA, USA.
Andy Huang
Hemei Han
Yi Jiang
Xiangdong Fang
Chao-Zhong Song
Steve Padilla
Hao Wang
Hongzhu Qu
John Stamatoyannopoulos
Qiliang Li
Thalia Papayannopoulou
University of Washington · USUniversity of Washington Medical Center · USBeijing Institute of Genomics · CN

Funding

VECTOR CONSTRUCTIONS FOR GENE THERAPY OF SICKLE CELL DISEASEP01HL053750 · NHLBI · UNIVERSITY OF WASHINGTON · PI RIVIERI, ISABELLE · 1994 to 2014
$30.4M
A Comprehensive catalog of human DNasel hypersensitive sitesU54HG004592 · NHGRI · UNIVERSITY OF WASHINGTON · PI STAMATOYANNOPOULOS, JOHN A · 2007 to 2011
$15.0M
BIOLOGICAL PROPERTIES AND REGULATION OF STEM CELLSR01HL046557 · NHLBI · UNIVERSITY OF WASHINGTON · PI STAMATOYANNOPOULOS, THALIA · 1991 to 2009
$3.3M
Hematopoietic/erythropoietic differentiation of human embryonic stem cellsK01DK077864 · NIDDK · UNIVERSITY OF WASHINGTON · PI CHANG, KAI-HSIN · 2007 to 2011
$591k
NHGRI NIH HHS U54 HG004592NHLBI NIH HHS HL46557NHLBI NIH HHS P01 HL053750NHLBI NIH HHS R01 HL046557NIDDK NIH HHS DK077864NIDDK NIH HHS K01 DK077864
6 · The paper itself

Abstract

To explore the response of β globin locus with established chromatin domains upon their exposure to new transcriptional environments, we transferred the chromatin-packaged β globin locus of undifferentiated human embryonic stem cells (hESCs) or hESC-derived erythroblasts into an adult transcriptional environment. Distinct globin expression patterns were observed. In hESC-derived erythroblasts where both ε and γ globin were active and marked by similar chromatin modifications, ε globin was immediately silenced upon transfer, whereas γ globin continued to be expressed for months, implying that different transcriptional environments were required for their continuing expression. Whereas β globin was silent both in hESCs and in hESC-derived erythroblasts, β globin was only activated upon transfer from hESCs, but not in the presence of dominant γ globin transferred from hESC-derived erythroblasts, confirming the competing nature of γ versus β globin expression. With time, however, silencing of γ globin occurred in the adult transcriptional environment with concurrent activation of β-globin, accompanied by a drastic change in the epigenetic landscape of γ and β globin gene regions without apparent changes in the transcriptional environment. This switching process could be manipulated by overexpression or downregulation of certain transcription factors. Our studies provide important insights into the interplay between the transcription environment and existing chromatin domains, and we offer an experimental system to study the time-dependent human globin switching.

Indexed as

AdultAnimalsAzacitidinebeta-GlobinsCarrier ProteinsCell DifferentiationCell Line, TumorCells, CulturedChromatinDecitabineDNA-Binding ProteinsEmbryo, MammalianEmbryonic Stem Cellsepsilon-GlobinsErythroblastsErythroid CellsAzacitidineBcl11a protein, mousebeta-GlobinsCarrier ProteinsChromatinDecitabineDNA-Binding Proteinsepsilon-Globinsgamma-GlobinsGlobinsNuclear ProteinsRepressor Proteins

Identifiers

PMID23993951
PMCPMC3836866
OpenAlexW2125154113

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.