Evidence map›Paper›PMID 23993788›Full record

ArticleDevelopmental cell2013

A TRP channel in the lysosome regulates large particle phagocytosis via focal exocytosis.

Mohammad Samie, Xiang Wang, Xiaoli Zhang, Andrew Goschka, Xinran Li, Xiping Cheng, Evan Gregg, Marlene Azar, Yue Zhuo, Abigail G Garrity and 12 more

Open access · bronzeAbstract read
In one paragraph

Article in Developmental cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 203 papers.

0numbers the graph read from it
0cells of the map it votes in
203citing papers in PubMed
16.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

203 citing papers in PubMed, 305 citations in OpenAlex.

  1. Quantitative comparison of PI(3,5)PMolecular biology of the cell · 2026
    Article
  2. TPC1-dependent control of endosomal pH and transferrin uptake determines cellular iron status.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Subcellular Cartography of the Phosphoinositide Multiverse.Biochimica et biophysica acta. Molecular and cell biology of lipids · 2026
    Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Quantitative comparison of PI(3,5)PbioRxiv : the preprint server for biology · 2025
    Article
  14. Review
  15. Review
  16. Review
  17. Article
  18. Article
  19. Rab27b Promotes Lysosomal Function and Alpha-Synuclein Clearance in Neurons.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2025
    Article
  20. TRPML-1 Dysfunction and Renal Tubulopathy in Mucolipidosis Type IV.Journal of the American Society of Nephrology : JASN · 2025
    Article

143 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 4 institutions in 1 country.

Mohammad SamieDepartment of Molecular, Cellular, and Developmental Biology, University of Michigan, Ann Arbor, MI 48109, USA.
Xiang Wang
Xiaoli Zhang
Andrew Goschka
Xinran Li
Xiping Cheng
Evan Gregg
Marlene Azar
Yue Zhuo
Abigail G Garrity
Qiong Gao
Susan Slaugenhaupt
Jim Pickel
Sergey N Zolov
Lois S Weisman
Guy M Lenk
Steve Titus
Marthe Bryant-Genevier
Noel Southall
Marugan Juan
Marc Ferrer
Haoxing Xu
University of Michigan–Ann Arbor · USNational Center for Advancing Translational Sciences · USCenter for Human Genetics · USNational Institutes of Health · US

Funding

Transgenic Resources for Neuroscience ResearchZICMH002901 · NIMH · NATIONAL INSTITUTE OF MENTAL HEALTH · PI AMARA, SUSAN · 2009 to 2025
$36.5M
INSERTIONAL MUTANTS AND DEVELOPMENT IN TRANSGENIC MICER01GM024872 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MEISLER, MIRIAM H · 1985 to 2024
$10.7M
Roles and regulation of PI(3,5)P2 and PI5P in neuronsR01NS064015 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI WEISMAN, LOIS S · 2009 to 2018
$3.8M
The Mucolipin TRP Ion ChannelsR01NS062792 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI XU, HAOXING · 2009 to 2018
$3.3M
TRP Ca2+ Channels in the SkinR01AR060837 · NIAMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI XU, HAOXING · 2012 to 2016
$1.7M
Kinetic High Throughput Screening for Agonists and Inhibitors of the TRPML1 Ion cR03MH096595 · NIMH · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI XU, HAOXING · 2012 to 2013
$77k
NIAMS NIH HHS AR060837NIAMS NIH HHS R01 AR060837NIGMS NIH HHS GM24872NIGMS NIH HHS R01 GM024872NIMH NIH HHS MH096595NIMH NIH HHS R03 MH096595NINDS NIH HHS NS062792NINDS NIH HHS NS064015NINDS NIH HHS R01 NS062792NINDS NIH HHS R01 NS064015
6 · The paper itself

Abstract

Phagocytosis of large extracellular particles such as apoptotic bodies requires delivery of the intracellular endosomal and lysosomal membranes to form plasmalemmal pseudopods. Here, we identified mucolipin TRP channel 1 (TRPML1) as the key lysosomal Ca2+ channel regulating focal exocytosis and phagosome biogenesis. Both particle ingestion and lysosomal exocytosis are inhibited by synthetic TRPML1 blockers and are defective in macrophages isolated from TRPML1 knockout mice. Furthermore, TRPML1 overexpression and TRPML1 agonists facilitate both lysosomal exocytosis and particle uptake. Using time-lapse confocal imaging and direct patch clamping of phagosomal membranes, we found that particle binding induces lysosomal PI(3,5)P2 elevation to trigger TRPML1-mediated lysosomal Ca2+ release specifically at the site of uptake, rapidly delivering TRPML1-resident lysosomal membranes to nascent phagosomes via lysosomal exocytosis. Thus phagocytic ingestion of large particles activates a phosphoinositide- and Ca2+-dependent exocytosis pathway to provide membranes necessary for pseudopod extension, leading to clearance of senescent and apoptotic cells in vivo.

Indexed as

AgingAnimalsCalciumExocytosisGene Expression RegulationLysosomesMiceParticle SizePhagocytosisPhosphatidylinositol PhosphatesTransient Receptor Potential ChannelsCalciumphosphatidylinositol 3,5-diphosphatePhosphatidylinositol PhosphatesTransient Receptor Potential Channels

Identifiers

PMID23993788
PMCPMC3794471
OpenAlexW1997861265

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.