Evidence map›Paper›PMID 23993094›Full record

ArticleCell2013

Endogenous nuclear RNAi mediates behavioral adaptation to odor.

Bi-Tzen Juang, Chen Gu, Linda Starnes, Francesca Palladino, Andrei Goga, Scott Kennedy, Noelle D L'Etoile

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 91 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Nematode mind: exploring the role of the RNA interference pathway in learning, memory and beyond.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
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  12. Fear conditioning in invertebrates.Frontiers in behavioral neuroscience · 2022
    Review
  13. Article
  14. Review
  15. Review
  16. Review
  17. Review
  18. eLife · 2021
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 3 countries.

Bi-Tzen JuangDepartments of Cell & Tissue Biology and Medicine, University of California, San Francisco, 513 Parnassus Avenue, San Francisco, CA 94143-0512, USA.
Chen GuDepartments of Cell & Tissue Biology and Medicine, University of California, San Francisco, 513 Parnassus Avenue, San Francisco, CA 94143-0512, USA; Amunix, Inc., 500 Ellis Street, Mountain View, CA 94043, USA.
Linda StarnesDepartments of Cell & Tissue Biology and Medicine, University of California, San Francisco, 513 Parnassus Avenue, San Francisco, CA 94143-0512, USA; Chromatin Structure and Function Group, NNF Center for Protein Research, Faculty of Health Sciences, University of Copenhagen, Blegdamsvej 3B, Room 4.3.07, 2200 Copenhagen N, Denmark.
Francesca PalladinoÉcole Normale Supérieure de Lyon, CNRS, Molecular Biology of the Cell Laboratory/ UMR5239, Université Claude Bernard Lyon, 69007 Lyon, France.
Andrei GogaDepartments of Cell & Tissue Biology and Medicine, University of California, San Francisco, 513 Parnassus Avenue, San Francisco, CA 94143-0512, USA.
Scott KennedyLaboratory of Genetics, University of Wisconsin-Madison, Madison, WI 53706, USA.
Noelle D L'EtoileDepartments of Cell & Tissue Biology and Medicine, University of California, San Francisco, 513 Parnassus Avenue, San Francisco, CA 94143-0512, USA. Electronic address: noelle.letoile@ucsf.edu.
University of California, San Francisco · USAmunix (United States) · USUniversité Claude Bernard Lyon 1 · FRUniversity of Copenhagen · DKUniversity of Wisconsin–Madison · US

Funding

Olfactory memory acquisition consolidation and recallR01DC005991 · NIDCD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI L 'ETOILE, NOELLE D · 2005 to 2022
$7.1M
Small Regulatory RNA Functions In The NucleusR01GM088289 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI KENNEDY, SCOTT G · 2009 to 2022
$4.4M
Multi-Generational Epigenetic Inheritance and Germline ImmortalityR01GM104232 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI KENNEDY, SCOTT G · 2013 to 2016
$1.4M
Spinning disk confocal / FRAP microscope for quantitative live cell imagingS10RR026758 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WITTMANN, TORSTEN · 2010 to 2010
$500k
NCRR NIH HHS S10 RR026758NIDCD NIH HHS R01 DC005991NIDCD NIH HHS R01DC005991NIGMS NIH HHS R01 GM088289NIGMS NIH HHS R01 GM104232
6 · The paper itself

Abstract

Most eukaryotic cells express small regulatory RNAs. The purpose of one class, the somatic endogenous siRNAs (endo-siRNAs), remains unclear. Here, we show that the endo-siRNA pathway promotes odor adaptation in C. elegans AWC olfactory neurons. In adaptation, the nuclear Argonaute NRDE-3, which acts in AWC, is loaded with siRNAs targeting odr-1, a gene whose downregulation is required for adaptation. Concomitant with increased odr-1 siRNA in AWC, we observe increased binding of the HP1 homolog HPL-2 at the odr-1 locus in AWC and reduced odr-1 mRNA in adapted animals. Phosphorylation of HPL-2, an in vitro substrate of the EGL-4 kinase that promotes adaption, is necessary and sufficient for behavioral adaptation. Thus, environmental stimulation amplifies an endo-siRNA negative feedback loop to dynamically repress cognate gene expression and shape behavior. This class of siRNA may act broadly as a rheostat allowing prolonged stimulation to dampen gene expression and promote cellular memory formation. PAPERFLICK:

Indexed as

Down-RegulationRNA InterferenceAdaptation, PhysiologicalAnimalsButanonesCaenorhabditis elegansCaenorhabditis elegans ProteinsChromosomal Proteins, Non-HistoneCyclic GMP-Dependent Protein KinasesGuanylate CyclaseOdorantsPhosphorylationRNA-Binding ProteinsRNA, HelminthRNA, Small InterferingSensory Receptor CellsButanonesCaenorhabditis elegans ProteinsChromosomal Proteins, Non-HistoneCyclic GMP-Dependent Protein KinasesEGL-4 protein, C elegansGuanylate CyclaseHPL-2 protein, C elegansNRDE-3 protein, C elegansODR-1 protein, C elegansRNA-Binding ProteinsRNA, HelminthRNA, Small Interfering

Identifiers

PMID23993094
PMCPMC4274153
OpenAlexW2129868858

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.