Evidence map›Paper›PMID 23992748›Full record

ArticleThe Journal of allergy and clinical immunology2014

A genome-wide association study of bronchodilator response in Latinos implicates rare variants.

Katherine A Drake, Dara G Torgerson, Christopher R Gignoux, Joshua M Galanter, Lindsey A Roth, Scott Huntsman, Celeste Eng, Sam S Oh, Sook Wah Yee, Lawrence Lin and 22 more

Open access · greenAbstract read
In one paragraph

Article in The Journal of allergy and clinical immunology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed, 4 pooled it
6.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 4 syntheses or guidelines pooled it, 110 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Trial
  6. Article
  7. Review
  8. Article
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  12. Review
  13. Article
  14. Heterogeneity of Treatment Response to Asthma.Advances in experimental medicine and biology · 2023
    Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Deorphaning a solute carrier 22 family member, SLC22A15, through functional genomic studies.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

32 authors at 14 institutions in 3 countries.

Katherine A DrakeDepartment of Medicine, University of California, San Francisco, Calif.
Dara G TorgersonDepartment of Medicine, University of California, San Francisco, Calif. Electronic address: dara.torgerson@ucsf.edu.
Christopher R GignouxDepartment of Medicine, University of California, San Francisco, Calif.
Joshua M GalanterDepartment of Medicine, University of California, San Francisco, Calif.
Lindsey A RothDepartment of Medicine, University of California, San Francisco, Calif.
Scott HuntsmanDepartment of Medicine, University of California, San Francisco, Calif.
Celeste EngDepartment of Medicine, University of California, San Francisco, Calif.
Sam S OhDepartment of Medicine, University of California, San Francisco, Calif.
Sook Wah YeeDepartment of Bioengineering and Therapeutic Sciences, University of California, San Francisco, Calif.
Lawrence LinDepartment of Bioengineering and Therapeutic Sciences, University of California, San Francisco, Calif.
Carlos D BustamanteDepartment of Genetics, Stanford University, Stanford, Calif.
Andrés Moreno-EstradaDepartment of Genetics, Stanford University, Stanford, Calif.
Karla SandovalDepartment of Genetics, Stanford University, Stanford, Calif.
Adam DavisChildren's Hospital and Research Center Oakland, Oakland, Calif.
Luisa N BorrellDepartment of Health Sciences, Graduate Program in Public Health, Lehman College, City University of New York, Bronx, New York.
Harold J FarberDepartment of Pediatrics, Section of Pulmonology, Baylor College of Medicine and Texas Children's Hospital, Houston, Tex.
Rajesh KumarChildren's Memorial Hospital, and the Feinberg School of Medicine, Northwestern University, Chicago, Ill.
Pedro C AvilaDivision of Allergy-Immunology, Feinberg School of Medicine, Northwestern University, Chicago, Ill.
Emerita Brigino-BuenaventuraDepartment of Allergy and Immunology, Kaiser Permanente-Vallejo Medical Center, Vallejo, Calif.
Rocio ChapelaInstituto Nacional de Enfermedades Respiratorias (INER), Mexico City, Mexico.
Jean G FordDepartment of Epidemiology, Johns Hopkins Bloomberg School of Public Health, Baltimore, Md.
Michael A LenoirBay Area Pediatrics, Oakland, Calif.
Fred LurmannSonoma Technologies, Petaluma, Calif.
Kelley MeadeChildren's Hospital and Research Center Oakland, Oakland, Calif.
Denise SerebriskyPediatric Pulmonary Division, Jacobi Medical Center, Bronx, New York.
Shannon ThyneDepartment of Pediatrics, University of California, San Francisco, Calif.
William Rodríguez-CintrónVeterans Caribbean Health Care System, San Juan, Puerto Rico.
Saunak SenDepartment of Biostatistics, University of California, San Francisco, Calif.
José R Rodríguez-SantanaCentro de Neumologia Pediatrica, San Juan, Puerto Rico.
Ryan D HernandezDepartment of Bioengineering and Therapeutic Sciences, University of California, San Francisco, Calif.
Kathleen M GiacominiDepartment of Bioengineering and Therapeutic Sciences, University of California, San Francisco, Calif.
Esteban G BurchardDepartment of Medicine, University of California, San Francisco, Calif; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, Calif.
University of California, San Francisco · USStanford University · USBaylor College of Medicine · USCentro de Neumologia Pediatrica · PRInstituto Nacional de Enfermedades Respiratorias · MXJacobi Medical Center · USJohns Hopkins University · USKaiser Permanente Vallejo Medical Center · USKIPP Bay Area Schools · USLehman College · USNorthwestern Memorial Hospital · USNorthwestern University · USSonoma Technology (United States) · USVA Caribbean Healthcare System · PR

Funding

ZOLENDRONIC ACID IN CHILDREN W/ SEVERE OSTEOGENESIS IMPERFECTAM01RR000188 · NCRR · BAYLOR COLLEGE OF MEDICINE · PI PLON, SHARON E. · 1985 to 2011
$30.6M
MUTIDISCIPLINARY TRAINING PROGRAM IN LUNG DISEASEST32HL007185 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI David J Erle, LAURENCE HUANG · 1985 to 2026
$24.6M
CLINICAL, PHARMACOLOGY, DRUG ACTION &PHARMACOKINETICST32GM007546 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Radojka Savic · 1985 to 2026
$8.9M
PHARMACEUTICAL SCIENCES AND PHARMACOGENOMICST32GM007175 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI AHITUV, NADAV, KROETZ, DEANNA L · 1985 to 2021
$7.1M
Social Interventions to address disparities In young adult tobacco useP60MD006902 · NIMHD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BIBBINS-DOMINGO, KIRSTEN · 2012 to 2016
$6.4M
Gene-environments and Admixture in Latino Asthmatics (GALA 2)R01ES015794 · NIEHS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BURCHARD, ESTEBAN GONZALEZ · 2008 to 2012
$5.4M
Postdoctoral training in tobacco controlR25CA113710 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GLANTZ, STANTON ARNOLD · 2006 to 2015
$5.4M
Whole Genome Analyses for Asthma in Latino PopulationsR01HL088133 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BURCHARD, ESTEBAN GONZALEZ · 2008 to 2012
$3.8M
Case-control Association Studies and Genetic ConfoundingR01HL078885 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BURCHARD, ESTEBAN GONZALEZ · 2005 to 2009
$1.9M
Wood Smoke and Genetic Susceptibility to Asthma in An Honduran PopulationK23HL111636 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GALANTER, JOSHUA MARK · 2012 to 2016
$832k
NCI NIH HHS R25 CA113710NCRR NIH HHS M01 RR000188NCRR NIH HHS M01-RR00188NHLBI NIH HHS HL078885NHLBI NIH HHS HL088133NHLBI NIH HHS K23 HL111636NHLBI NIH HHS R01 HL078885NHLBI NIH HHS R01 HL088133NHLBI NIH HHS T32 HL007185NIEHS NIH HHS ES015794NIEHS NIH HHS R01 ES015794NIGMS NIH HHS T32 GM007175NIGMS NIH HHS T32 GM007546NIGMS NIH HHS T32GM07175NIMHD NIH HHS P60 MD006902NIMHD NIH HHS P60MD006902
6 · The paper itself

Abstract

backgroundThe primary rescue medication to treat acute asthma exacerbation is the short-acting β₂-adrenergic receptor agonist; however, there is variation in how well a patient responds to treatment. Although these differences might be due to environmental factors, there is mounting evidence for a genetic contribution to variability in bronchodilator response (BDR).

objectiveTo identify genetic variation associated with bronchodilator drug response in Latino children with asthma.

methodsWe performed a genome-wide association study (GWAS) for BDR in 1782 Latino children with asthma using standard linear regression, adjusting for genetic ancestry and ethnicity, and performed replication studies in an additional 531 Latinos. We also performed admixture mapping across the genome by testing for an association between local European, African, and Native American ancestry and BDR, adjusting for genomic ancestry and ethnicity.

resultsWe identified 7 genetic variants associated with BDR at a genome-wide significant threshold (P < 5 × 10(-8)), all of which had frequencies of less than 5%. Furthermore, we observed an excess of small P values driven by rare variants (frequency, <5%) and by variants in the proximity of solute carrier (SLC) genes. Admixture mapping identified 5 significant peaks; fine mapping within these peaks identified 2 rare variants in SLC22A15 as being associated with increased BDR in Mexicans. Quantitative PCR and immunohistochemistry identified SLC22A15 as being expressed in the lung and bronchial epithelial cells.

conclusionOur results suggest that rare variation contributes to individual differences in response to albuterol in Latinos, notably in SLC genes that include membrane transport proteins involved in the transport of endogenous metabolites and xenobiotics. Resequencing in larger, multiethnic population samples and additional functional studies are required to further understand the role of rare variation in BDR.

Indexed as

AdolescentAdultAlbuterolAsthmaBronchodilator AgentsChildForced Expiratory VolumeGenome-Wide Association StudyGenotypeHispanic or LatinoHumansPolymorphism, Single NucleotideYoung AdultAlbuterolBronchodilator Agentsadmixture mappingasthmaBDRBronchodilator responseGALA IGALA IIGenes-Environments & Admixture in Latino AmericansGenetics of Asthma in Latino Americansgenome-wide association studyGenome-wide association studyGWASIGFInsulin-like growth factorLatinosLDLinkage disequilibriumMAFMinor allele frequencyQCQuality controlrare variantsSABAShort-acting β(2)-adrenergic receptor agonistSingle nucleotide polymorphismSLCSNPSolute carrierβ(2)-Adrenergic receptorβ(2)AR

Identifiers

PMID23992748
PMCPMC3938989
OpenAlexW2069185928

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.