Evidence map›Paper›PMID 23992616›Full record

ArticleACS chemical biology2013

Direct comparison of a genetically encoded sensor and small molecule indicator: implications for quantification of cytosolic Zn(2+).

Yan Qin, Jose G Miranda, Caitlin I Stoddard, Kevin M Dean, Domenico F Galati, Amy E Palmer

Open access · greenAbstract readComparative Study
In one paragraph

Article in ACS chemical biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
8.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 90 citations in OpenAlex.

  1. Article
  2. New Fluorescent Dye for the Detection of ZnJournal of fluorescence · 2025
    Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Human cells experience a ZnCell reports · 2023
    Article
  8. Article
  9. Genetically encoded fluorescent sensors for metals in biology.Current opinion in chemical biology · 2023
    Review
  10. A genetically encoded fluorescent sensor for manganese(II), engineered from lanmodulin.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  11. Review
  12. Article
  13. ZnProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  14. Article
  15. Tools and techniques for illuminating the cell biology of zinc.Biochimica et biophysica acta. Molecular cell research · 2021
    Review
  16. ZIGIR, a Granule-Specific ZnCell reports · 2020
    Article
  17. Article
  18. Review
  19. Article
  20. Intracellular ZnScientific reports · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Yan QinDepartment of Chemistry and Biochemistry and BioFrontiers Institute, University of Colorado-Boulder , UCB 596, Boulder, Colorado 80309, United States.
Jose G Miranda
Caitlin I Stoddard
Kevin M Dean
Domenico F Galati
Amy E Palmer
University of Colorado Boulder · US

Funding

ZWITTERION SURFACTANT DDMAB FOR IMPROV STABIL OF PROTEINP41RR001209 · NCRR · STANFORD UNIVERSITY · PI GONZALEZ, ANA M · 1985 to 2011
$38.9M
Predoctoral Training Molecular BiophysicsT32GM065103 · NIGMS · UNIVERSITY OF COLORADO AT BOULDER · PI FALKE, JOSEPH J · 2002 to 2021
$4.3M
Genetically Encoded Sensors Shed Light on Zinc HomeostasisR01GM084027 · NIGMS · UNIVERSITY OF COLORADO · PI PALMER, AMY E · 2008 to 2016
$2.6M
Characterization of zinc dysregulation in normal and cancerous prostate cells.F31GM093443 · NIGMS · UNIVERSITY OF COLORADO · PI MIRANDA, JOSE GUADALUPE · 2011 to 2012
$84k
Howard Hughes Medical InstituteNCRR NIH HHS P41 RR001209NIGMS NIH HHS F31 GM093443NIGMS NIH HHS GM084027NIGMS NIH HHS R01 GM084027NIGMS NIH HHS T32 GM-065103NIGMS NIH HHS T32 GM065103
6 · The paper itself

Abstract

Fluorescent sensors are powerful tools for visualizing and quantifying molecules and ions in living cells. A variety of small molecule and genetically encoded sensors have been developed for studying intracellular Zn(2+) homeostasis and signaling, but no direct comparisons exist, making it challenging for researchers to identify the appropriate sensor for a given application. Here we directly compare the widely used small molecule probe FluoZin-3 and a genetically encoded sensor, ZapCY2. We demonstrate that, in contrast to FluoZin-3, ZapCY2 exhibits a well-defined cytosolic localization, provides estimates of Zn(2+) concentration with little variability, does not perturb cytosolic Zn(2+) levels, and exhibits rapid Zn(2+) response dynamics. ZapCY2 was used to measure Zn(2+) concentrations in 5 different cell types, revealing higher cytosolic Zn(2+) levels in prostate cancer cells compared to normal prostate cells (although the total zinc is reduced in prostate cancer cells), suggesting distinct regulatory mechanisms.

Indexed as

Cells, CulturedCytosolFluorescent DyesHeLa CellsHumansLuminescent ProteinsPolycyclic CompoundsRecombinant Fusion ProteinsZincFluorescent DyesFluoZin-3Luminescent ProteinsPolycyclic CompoundsRecombinant Fusion ProteinsZapCY2 proteinZinc

Identifiers

PMID23992616
PMCPMC4022295
OpenAlexW2057057258

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.