Evidence map›Paper›PMID 23991893›Full record

ArticleJournal of the American Chemical Society2013

Identification of an intermediate methyl carrier in the radical S-adenosylmethionine methylthiotransferases RimO and MiaB.

Bradley J Landgraf, Arthur J Arcinas, Kyung-Hoon Lee, Squire J Booker

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 57 citations in OpenAlex.

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  8. Highlighting the Unique Roles of RadicalJournal of bacteriology · 2022
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  9. Biosynthesis and Degradation of Sulfur Modifications in tRNAs.International journal of molecular sciences · 2021
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  14. First Step in Catalysis of the RadicalJournal of the American Chemical Society · 2020
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  15. Methanogenesis marker protein 10 (Mmp10) fromThe Journal of biological chemistry · 2019
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  16. Parsing redox potentials of five ferredoxins found within Thermotoga maritima.Protein science : a publication of the Protein Society · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Bradley J Landgraf *Department of Chemistry, The Pennsylvania State University, University Park, Pennsylvania, 16802, United States.
Arthur J Arcinas *Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania, 16802, United States.
Kyung-Hoon LeeDepartment of Chemistry, The Pennsylvania State University, University Park, Pennsylvania, 16802, United States.
Squire J BookerDepartment of Chemistry, The Pennsylvania State University, University Park, Pennsylvania, 16802, United States.
Pennsylvania State University · US

Funding

Mechanistic Studies of Lipoic Acid SynthaseR01GM063847 · NIGMS · PENNSYLVANIA STATE UNIVERSITY-UNIV PARK · PI BOOKER, SQUIRE J. · 2002 to 2010
$2.2M
Functionalization of unactivated sp2-hybridized carbon atomsR01GM103268 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI BOLLINGER, JOSEPH M, BOOKER, SQUIRE J. · 2012 to 2015
$1.3M
NIGMS NIH HHS GM-103268NIGMS NIH HHS GM-63847NIGMS NIH HHS R01 GM063847NIGMS NIH HHS R01 GM103268
6 · The paper itself

Abstract

RimO and MiaB are radical S-adenosylmethionine (SAM) enzymes that catalyze the attachment of methylthio (-SCH3) groups to macromolecular substrates. RimO attaches a methylthio group at C3 of aspartate 89 of protein S12, a component of the 30S subunit of the bacterial ribosome. MiaB attaches a methylthio group at C2 of N(6)-(isopentenyl)adenosine, found at nucleotide 37 in several prokaryotic tRNAs. These two enzymes are prototypical members of a subclass of radical SAM enzymes called methylthiotransferases (MTTases). It had been assumed that the sequence of steps in MTTase reactions involves initial sulfur insertion into the organic substrate followed by capping of the inserted sulfur atom with a SAM-derived methyl group. In this work, however, we show that both RimO and MiaB from Thermotoga maritima catalyze methyl transfer from SAM to an acid/base labile acceptor on the protein in the absence of their respective macromolecular substrates. Consistent with the assignment of the acceptor as an iron-sulfur cluster, denaturation of the SAM-treated protein with acid results in production of methanethiol. When RimO or MiaB is first incubated with SAM in the absence of substrate and reductant and then incubated with excess S-adenosyl-l-[methyl-d3]methionine in the presence of substrate and reductant, production of the unlabeled product precedes production of the deuterated product, showing that the methylated species is chemically and kinetically competent to be an intermediate.

Indexed as

Bacterial ProteinsBiocatalysisFree RadicalsMethylationMolecular StructureS-AdenosylmethionineSulfhydryl CompoundsThermotoga maritimaBacterial ProteinsFree RadicalsmethylmercaptanS-AdenosylmethionineSulfhydryl Compounds

Identifiers

PMID23991893
PMCPMC4023531
OpenAlexW2428083706

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.