Evidence map›Paper›PMID 23991253›Full record

ArticleStandards in genomic sciences2013

Complete genome sequence of Halorhodospira halophila SL1.

Jean F Challacombe, Sophia Majid, Ratnakar Deole, Thomas S Brettin, David Bruce, Susana F Delano, John C Detter, Cheryl D Gleasner, Cliff S Han, Monica Misra and 11 more

Open access · goldAbstract read
In one paragraph

Article in Standards in genomic sciences, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 33 citations in OpenAlex.

  1. Review
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  10. Adaptation to Varying Salinity inFrontiers in microbiology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 9 institutions in 1 country.

Jean F ChallacombeLos Alamos National Laboratory and DOE Joint Genome Institute, Bioscience Division, Los Alamos, New Mexico, USA.
Sophia Majid
Ratnakar Deole
Thomas S Brettin
David Bruce
Susana F Delano
John C Detter
Cheryl D Gleasner
Cliff S Han
Monica Misra
Krista G Reitenga
Natalia Mikhailova
Tanja Woyke
Sam Pitluck
Matt Nolan
Miriam L Land
Elizabeth Saunders
Roxanne Tapia
Alla Lapidus
Natalia Ivanova
Wouter D Hoff
Los Alamos National Laboratory · USJoint Genome Institute · USOklahoma State University · USArgonne National Laboratory · USFox Chase Cancer Center · USLawrence Berkeley National Laboratory · USNoblis · USOak Ridge National Laboratory · USUniversity of Chicago · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Halorhodospira halophila is among the most halophilic organisms known. It is an obligately photosynthetic and anaerobic purple sulfur bacterium that exhibits autotrophic growth up to saturated NaCl concentrations. The type strain H. halophila SL1 was isolated from a hypersaline lake in Oregon. Here we report the determination of its entire genome in a single contig. This is the first genome of a phototrophic extreme halophile. The genome consists of 2,678,452 bp, encoding 2,493 predicted genes as determined by automated genome annotation. Of the 2,407 predicted proteins, 1,905 were assigned to a putative function. Future detailed analysis of this genome promises to yield insights into the halophilic adaptations of this organism, its ability for photoautotrophic growth under extreme conditions, and its characteristic sulfur metabolism.

Indexed as

halophilephototrophicpurple sulfur bacteriumsaturated saltsulfur metabolism

Identifiers

PMID23991253
PMCPMC3746430
OpenAlexW2042397938

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.