Evidence map›Paper›PMID 23991251›Full record

ArticleStandards in genomic sciences2013

Complete genome sequence of Streptococcus agalactiae strain SA20-06, a fish pathogen associated to meningoencephalitis outbreaks.

Ulisses de Pádua Pereira, Anderson Rodrigues Dos Santos, Syed Shah Hassan, Flávia Figueira Aburjaile, Siomar de Castro Soares, Rommel Thiago Jucá Ramos, Adriana Ribeiro Carneiro, Luís Carlos Guimarães, Sintia Silva de Almeida, Carlos Augusto Almeida Diniz and 13 more

Open access · goldAbstract read
In one paragraph

Article in Standards in genomic sciences, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
5.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 29 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Research Advances on Tilapia Streptococcosis.Pathogens (Basel, Switzerland) · 2021
    Review
  5. Article
  6. Article
  7. Review
  8. Transcriptome and Proteome of Fish-PathogenicFrontiers in microbiology · 2018
    Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 4 institutions in 1 country.

Ulisses de Pádua PereiraAQUAVET- Laboratory of Aquatic Animal Diseases, Department of Preventive Veterinary Medicine, Federal University of Minas Gerais, Belo Horizonte, MG, Brazil ; Department of Veterinary Medicine, Federal University of Lavras, Lavras, MG, Brazil.
Anderson Rodrigues Dos Santos
Syed Shah Hassan
Flávia Figueira Aburjaile
Siomar de Castro Soares
Rommel Thiago Jucá Ramos
Adriana Ribeiro Carneiro
Luís Carlos Guimarães
Sintia Silva de Almeida
Carlos Augusto Almeida Diniz
Maria Silvanira Barbosa
Pablo Gomes de Sá
Amjad Ali
Syeda Marriam Bakhtiar
Fernanda Alves Dorella
Adhemar Zerlotini
Flávio Marcos Gomes Araújo
Laura Rabelo Leite
Guilherme Oliveira
Anderson Miyoshi
Artur Silva
Vasco Azevedo
Henrique César Pereira Figueiredo
Universidade Federal de Minas Gerais · BRCentro de Excelência em Bioinformática · BRUniversidade Federal do Pará · BRBrazilian Agricultural Research Corporation · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Streptococcus agalactiae (Lancefield group B; GBS) is the causative agent of meningoencephalitis in fish, mastitis in cows, and neonatal sepsis in humans. Meningoencephalitis is a major health problem for tilapia farming and is responsible for high economic losses worldwide. Despite its importance, the genomic characteristics and the main molecular mechanisms involved in virulence of S. agalactiae isolated from fish are still poorly understood. Here, we present the genomic features of the 1,820,886 bp long complete genome sequence of S. agalactiae SA20-06 isolated from a meningoencephalitis outbreak in Nile tilapia (Oreochromis niloticus) from Brazil, and its annotation, consisting of 1,710 protein-coding genes (excluding pseudogenes), 7 rRNA operons, 79 tRNA genes and 62 pseudogenes.

Indexed as

fish pathogengenome sequencingStreptococcus agalactiae

Identifiers

PMID23991251
PMCPMC3746423
OpenAlexW1989965839

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.