Evidence map›Paper›PMID 23990946›Full record

ArticlePloS one2013

Apical groove type and molecular phylogeny suggests reclassification of Cochlodinium geminatum as Polykrikos geminatum.

Dajun Qiu, Liangmin Huang, Sheng Liu, Huan Zhang, Senjie Lin

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Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

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3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. International journal of environmental research and public health · 2021
    Article
  3. Article
  4. Article
  5. Cryptophyte farming by symbiotic ciliate host detected in situ.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  6. Article
  7. Article
4 · The record

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5 · Who and what money

Authors and funding

5 authors.

Dajun QiuCAS Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Science, Guangzhou, China.
Liangmin Huang
Sheng Liu
Huan Zhang
Senjie Lin

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Traditionally Cocholodinium and Gymnodinium sensu lato clade are distinguished based on the cingulum turn number, which has been increasingly recognized to be inadequate for Gymnodiniales genus classification. This has been improved by the combination of the apical groove characteristics and molecular phylogeny, which has led to the erection of several new genera (Takayama, Akashiwo, Karenia, and Karlodinium). Taking the apical groove characteristics and molecular phylogeny combined approach, we reexamined the historically taxonomically uncertain species Cochlodinium geminatum that formed massive blooms in Pearl River Estuary, China, in recent years. Samples were collected from a bloom in 2011 for morphological, characteristic pigment, and molecular analyses. We found that the cingulum in this species wraps around the cell body about 1.2 turns on average but can appear under the light microscopy to be >1.5 turns after the cells have been preserved. The shape of its apical groove, however, was stably an open-ended anticlockwise loop of kidney bean shape, similar to that of Polykrikos. Furthermore, the molecular phylogenetic analysis using 18S rRNA-ITS-28S rRNA gene cistron we obtained in this study also consistently placed this species closest to Polykrikos within the Gymnodinium sensu stricto clade and set it far separated from the clade of Cochlodinium. These results suggest that this species should be transferred to Polykrikos as Polykrikos geminatum. Our results reiterate the need to use the combination of apical groove morphology and molecular phylogeny for the classification of species within the genus of Cochlodinium and other Gymnodiniales lineages.

Indexed as

Cell NucleusCell SeparationChinaClassificationDinoflagellidaEstuariesMicroscopy, Electron, ScanningMicroscopy, Electron, TransmissionMitochondriaPhylogenyRNA, Ribosomal, 18SRNA, Ribosomal, 28SSequence Analysis, DNARNA, Ribosomal, 18SRNA, Ribosomal, 28S

Identifiers

PMID23990946
PMCPMC3747182

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.