Evidence map›Paper›PMID 23990789›Full record

ArticlePLoS pathogens2013

TRIM5 alpha drives SIVsmm evolution in rhesus macaques.

Fan Wu, Andrea Kirmaier, Robert Goeken, Ilnour Ourmanov, Laura Hall, Jennifer S Morgan, Kenta Matsuda, Alicia Buckler-White, Keiko Tomioka, Ronald Plishka and 3 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Restriction of HIV-1 and other retroviruses by TRIM5.Nature reviews. Microbiology · 2019
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Impact of TRIM5α in vivo.AIDS (London, England) · 2015
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Fan WuLaboratory of Molecular Microbiology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, United States of America.
Andrea Kirmaier
Robert Goeken
Ilnour Ourmanov
Laura Hall
Jennifer S Morgan
Kenta Matsuda
Alicia Buckler-White
Keiko Tomioka
Ronald Plishka
Sonya Whitted
Welkin Johnson
Vanessa M Hirsch
National Institute of Allergy and Infectious Diseases · USBoston College · USNational Institutes of Health · US

Funding

Cross-Species transmission and adaptation of primate lentivirusesR01AI083118 · NIAID · HARVARD MEDICAL SCHOOL · PI JOHNSON, WELKIN E · 2009 to 2019
$4.0M
Intrinsic Immunity and AIDSR01AI095092 · NIAID · HARVARD MEDICAL SCHOOL · PI JOHNSON, WELKIN E · 2011 to 2015
$3.0M
Intramural NIH HHSNIAID NIH HHS AI083118NIAID NIH HHS AI095092NIAID NIH HHS R01 AI083118NIAID NIH HHS R01 AI095092
6 · The paper itself

Abstract

The antagonistic interaction with host restriction proteins is a major driver of evolutionary change for viruses. We previously reported that polymorphisms of the TRIM5α B30.2/SPRY domain impacted the level of SIVsmm viremia in rhesus macaques. Viremia in macaques homozygous for the non-restrictive TRIM5α allele TRIM5(Q) was significantly higher than in macaques expressing two restrictive TRIM5alpha alleles TRIM5(TFP/TFP) or TRIM5(Cyp/TFP). Using this model, we observed that despite an early impact on viremia, SIVsmm overcame TRIM5α restriction at later stages of infection and that increasing viremia was associated with specific amino acid substitutions in capsid. Two amino acid substitutions (P37S and R98S) in the capsid region were associated with escape from TRIM5(TFP) restriction and substitutions in the CypA binding-loop (GPLPA87-91) in capsid were associated with escape from TRIM5(Cyp). Introduction of these mutations into the original SIVsmE543 clone not only resulted in escape from TRIM5α restriction in vitro but the P37S and R98S substitutions improved virus fitness in macaques with homozygous restrictive TRIM(TFP) alleles in vivo. Similar substitutions were observed in other SIVsmm strains following transmission and passage in macaques, collectively providing direct evidence that TRIM5α exerts selective pressure on the cross-species transmission of SIV in primates.

Indexed as

AllelesEvolution, MolecularMutation, MissenseAmino Acid SubstitutionAnimalsBase SequenceCarrier ProteinsMacaca mulattaMolecular Sequence DataProtein Structure, SecondarySimian Acquired Immunodeficiency SyndromeSimian Immunodeficiency VirusViremiaCarrier Proteins

Identifiers

PMID23990789
PMCPMC3749954
OpenAlexW1990624998

What OpenQuestion holds

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LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.