Evidence map›Paper›PMID 23990680›Full record

ArticleJournal of the American Society of Nephrology : JASN2013

LMX1B is essential for the maintenance of differentiated podocytes in adult kidneys.

Tillmann Burghardt, Jürgen Kastner, Hani Suleiman, Eric Rivera-Milla, Natalya Stepanova, Claudio Lottaz, Marion Kubitza, Carsten A Böger, Sarah Schmidt, Mathias Gorski and 13 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of the American Society of Nephrology : JASN, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 70 citations in OpenAlex.

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  13. Quality assessment and refinement of chromatin accessibility data using a sequence-based predictive model.Proceedings of the National Academy of Sciences of the United States of America · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 7 institutions in 3 countries.

Tillmann BurghardtInstitutes for Molecular and Cellular Anatomy.
Jürgen Kastner
Hani Suleiman
Eric Rivera-Milla
Natalya Stepanova
Claudio Lottaz
Marion Kubitza
Carsten A Böger
Sarah Schmidt
Mathias Gorski
Uwe de Vries
Helga Schmidt
Irmgard Hertting
Jeffrey Kopp
Anne Rascle
Markus Moser
Iris M Heid
Richard Warth
Rainer Spang
Joachim Wegener
Claudia T Mierke
Christoph Englert
Ralph Witzgall
Genomics (United Kingdom) · GBLeibniz Institute on Aging - Fritz Lipmann Institute (FLI) · DEMax Planck Institute of Biochemistry · DEUniversity of Regensburg · DELeipzig University · DENational Institutes of Health · USUniversity Hospital Regensburg · DE

Funding

Focal Segmental Glomerulosclerosis: Genetics & MechanismsZIADK043308 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI KOPP, JEFFREY BURNETT · 2009 to 2024
$15.7M
6 · The paper itself

Abstract

Mutations of the LMX1B gene cause nail-patella syndrome, a rare autosomal-dominant disorder affecting the development of the limbs, eyes, brain, and kidneys. The characterization of conventional Lmx1b knockout mice has shown that LMX1B regulates the development of podocyte foot processes and slit diaphragms, but studies using podocyte-specific Lmx1b knockout mice have yielded conflicting results regarding the importance of LMX1B for maintaining podocyte structures. In order to address this question, we generated inducible podocyte-specific Lmx1b knockout mice. One week of Lmx1b inactivation in adult mice resulted in proteinuria with only minimal foot process effacement. Notably, expression levels of slit diaphragm and basement membrane proteins remained stable at this time point, and basement membrane charge properties also did not change, suggesting that alternative mechanisms mediate the development of proteinuria in these mice. Cell biological and biophysical experiments with primary podocytes isolated after 1 week of Lmx1b inactivation indicated dysregulation of actin cytoskeleton organization, and time-resolved DNA microarray analysis identified the genes encoding actin cytoskeleton-associated proteins, including Abra and Arl4c, as putative LMX1B targets. Chromatin immunoprecipitation experiments in conditionally immortalized human podocytes and gel shift assays showed that LMX1B recognizes AT-rich binding sites (FLAT elements) in the promoter regions of ABRA and ARL4C, and knockdown experiments in zebrafish support a model in which LMX1B and ABRA act in a common pathway during pronephros development. Our report establishes the importance of LMX1B in fully differentiated podocytes and argues that LMX1B is essential for the maintenance of an appropriately structured actin cytoskeleton in podocytes.

Indexed as

ActinsAgingAnimalsApoptosisCell DifferentiationCollagen Type IVIntracellular Signaling Peptides and ProteinsLIM-Homeodomain ProteinsMembrane ProteinsMiceMice, Inbred C57BLNail-Patella SyndromeOligonucleotide Array Sequence AnalysisPodocytesProteinuriaTranscription FactorsActinsCollagen Type IVIntracellular Signaling Peptides and ProteinsLIM homeobox transcription factor 1 betaLIM-Homeodomain ProteinsMembrane ProteinsNPHS2 proteinTranscription Factors

Identifiers

PMID23990680
PMCPMC3810075
OpenAlexW2098016006

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.