Evidence map›Paper›PMID 23990463›Full record

ArticleThe Journal of biological chemistry2013

Ion-specific effects on prion nucleation and strain formation.

Jonathan Rubin, Hasan Khosravi, Kathryn L Bruce, Megan E Lydon, Sven H Behrens, Yury O Chernoff, Andreas S Bommarius

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Review
  2. Article
  3. Dynamics of oligomer and amyloid fibril formation by yeast prion Sup35 observed by high-speed atomic force microscopy.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  4. Review
  5. Article
  6. Molecular basis for diversification of yeast prion strain conformation.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  7. Article
  8. Article
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Jonathan RubinFrom the School of Chemical and Biomolecular Engineering,; Parker H. Petit Institute of Bioengineering and Bioscience.
Hasan KhosraviParker H. Petit Institute of Bioengineering and Bioscience,; School of Chemistry and Biochemistry, and.
Kathryn L BruceParker H. Petit Institute of Bioengineering and Bioscience,; School of Biology, Georgia Institute of Technology, Atlanta, Georgia 30332.
Megan E LydonSchool of Chemistry and Biochemistry, and.
Sven H BehrensFrom the School of Chemical and Biomolecular Engineering,; Parker H. Petit Institute of Bioengineering and Bioscience.
Yury O ChernoffParker H. Petit Institute of Bioengineering and Bioscience,; School of Biology, Georgia Institute of Technology, Atlanta, Georgia 30332. Electronic address: yury.chernoff@biology.gatech.edu.
Andreas S BommariusFrom the School of Chemical and Biomolecular Engineering,; Parker H. Petit Institute of Bioengineering and Bioscience,; School of Chemistry and Biochemistry, and. Electronic address: andreas.bommarius@chbe.gatech.edu.

Funding

Ubiquitin and regulation of prion induction by a short-lived proteinR01GM093294 · NIGMS · EMORY UNIVERSITY · PI WILKINSON, KEITH D · 2011 to 2014
$1.3M
NIGMS NIH HHS R01 GM093294NIGMS NIH HHS R01GM093294
6 · The paper itself

Abstract

Ordered, fibrous, self-seeding aggregates of misfolded proteins known as amyloids are associated with important diseases in mammals and control phenotypic traits in fungi. A given protein may adopt multiple amyloid conformations, known as variants or strains, each of which leads to a distinct disease pattern or phenotype. Here, we study the effect of Hofmeister ions on amyloid nucleation and strain generation by the prion domain-containing fragment (Sup35NM) of a yeast protein Sup35p. Strongly hydrated anions (kosmotropes) initiate nucleation quickly and cause rapid fiber elongation, whereas poorly hydrated anions (chaotropes) delay nucleation and mildly affect the elongation rate. For the first time, we demonstrate that kosmotropes favor formation of amyloid strains that are characterized by lower thermostability and higher frangibility in vitro and stronger phenotypic and proliferation patterns effectively in vivo as compared with amyloids formed in chaotropes. These phenomena point to inherent differences in the biochemistry of Hofmeister ions. Our work shows that the ionic composition of a solution not only influences the kinetics of amyloid nucleation but also determines the amyloid strain that is preferentially formed.

Indexed as

AmyloidPeptide Termination FactorsPrionsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAmyloidPeptide Termination FactorsPrionsSaccharomyces cerevisiae ProteinsSUP35 protein, S cerevisiaeAmyloidChaotropeHofmeister SeriesKosmotropeProtein AggregationProtein ConformationTranslation Release FactorsYeast

Identifiers

PMID23990463
PMCPMC3798495

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.