Evidence map›Paper›PMID 23990329›Full record

ArticleNucleic acids research2013

Mutant DnaAs of Escherichia coli that are refractory to negative control.

Sundari Chodavarapu, Magdalena M Felczak, Lyle A Simmons, Alec Murillo, Jon M Kaguni

Abstract read
In one paragraph

Article in Nucleic acids research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Elevated Levels of the Escherichia coliJournal of bacteriology · 2021
    Article
  5. Review
  6. The DnaA Tale.Frontiers in microbiology · 2018
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Sundari ChodavarapuDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824-1319, USA and Department of Molecular, Cellular and Developmental Biology, University of Michigan, Ann Arbor, MI 48109-1048, USA.
Magdalena M Felczak
Lyle A Simmons
Alec Murillo
Jon M Kaguni

Funding

Recruitment and activation of DnaB helicase in Escherichia coli DNA replicationR01GM090063 · NIGMS · MICHIGAN STATE UNIVERSITY · PI KAGUNI, JON M · 2011 to 2014
$1.0M
NIGMS NIH HHS GM090063NIGMS NIH HHS R01 GM090063
6 · The paper itself

Abstract

DnaA is the initiator of DNA replication in bacteria. A mutant DnaA named DnaAcos is unusual because it is refractory to negative regulation. We developed a genetic method to isolate other mutant DnaAs that circumvent regulation to extend our understanding of mechanisms that control replication initiation. Like DnaAcos, one mutant bearing a tyrosine substitution for histidine 202 (H202Y) withstands the regulation exerted by datA, hda and dnaN (β clamp), and both DnaAcos and H202Y resist inhibition by the Hda-β clamp complex in vitro. Other mutant DnaAs carrying G79D, E244K, V303M or E445K substitutions are either only partially sensitive or refractory to inhibition by the Hda-β clamp complex in vitro but are responsive to hda expression in vivo. All mutant DnaAs remain able to interact directly with Hda. Of interest, both DnaAcos and DnaAE244K bind more avidly to Hda. These mutants, by sequestrating Hda, may limit its availability to regulate other DnaA molecules, which remain active to induce extra rounds of DNA replication. Other evidence suggests that a mutant bearing a V292M substitution hyperinitiates by escaping the effect of an unknown regulatory factor. Together, our results provide new insight into the mechanisms that regulate replication initiation in Escherichia coli.

Indexed as

DNA ReplicationMutationAdenosine TriphosphatasesAllelesBacterial ProteinsDNA-Binding ProteinsDNA-Directed DNA PolymeraseDNA Polymerase IIIEscherichia coli ProteinsReplication OriginAdenosine TriphosphatasesBacterial Proteinsbeta subunit, DNA polymerase IIIDnaA protein, BacteriaDNA-Binding ProteinsDNA-Directed DNA PolymerasednaN protein, BacteriaDNA Polymerase IIIEscherichia coli ProteinsHda protein, E coli

Identifiers

PMID23990329
PMCPMC3905854

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.