Evidence map›Paper›PMID 23990199›Full record

ArticleJournal of biomolecular NMR2013

Selectively dispersed isotope labeling for protein structure determination by magic angle spinning NMR.

Matthew T Eddy, Marina Belenky, Astrid C Sivertsen, Robert G Griffin, Judith Herzfeld

Open access · greenAbstract read
In one paragraph

Article in Journal of biomolecular NMR, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Great Offset Difference Internuclear Selective Transfer.The journal of physical chemistry letters · 2023
    Article
  3. Review
  4. Article
  5. Extensively sparseJournal of biomolecular NMR · 2021
    Article
  6. Review
  7. Review
  8. Proton-Assisted Recoupling (PAR) in Peptides and Proteins.The journal of physical chemistry. B · 2017
    Article
  9. Article
  10. Site-selectiveJournal of biomolecular NMR · 2017
    Article
  11. Article
  12. Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Matthew T EddyDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, USA.
Marina Belenky
Astrid C Sivertsen
Robert G Griffin
Judith Herzfeld
Massachusetts Institute of Technology · USBrandeis University · US

Funding

OverallP41EB002026 · NIBIB · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GRIFFIN, ROBERT GUY · 2003 to 2018
$17.9M
Solid State NMR Studies of Membrane ProteinsR01EB001960 · NIBIB · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GRIFFIN, ROBERT GUY · 2003 to 2017
$6.5M
NMR STUDIES OF BIOLOGICAL MEMBRANESR01EB001035 · NIBIB · BRANDEIS UNIVERSITY · PI HERZFELD, JUDITH · 2003 to 2012
$2.9M
NIBIB NIH HHS EB001035NIBIB NIH HHS EB001960NIBIB NIH HHS EB002026NIBIB NIH HHS P41 EB002026NIBIB NIH HHS R01 EB001035NIBIB NIH HHS R01 EB001960
6 · The paper itself

Abstract

The power of nuclear magnetic resonance spectroscopy derives from its site-specific access to chemical, structural and dynamic information. However, the corresponding multiplicity of interactions can be difficult to tease apart. Complimentary approaches involve spectral editing on the one hand and selective isotope substitution on the other. Here we present a new "redox" approach to the latter: acetate is chosen as the sole carbon source for the extreme oxidation numbers of its two carbons. Consistent with conventional anabolic pathways for the amino acids, [1-(13)C] acetate does not label α carbons, labels other aliphatic carbons and the aromatic carbons very selectively, and labels the carboxyl carbons heavily. The benefits of this labeling scheme are exemplified by magic angle spinning spectra of microcrystalline immunoglobulin binding protein G (GB1): the elimination of most J-couplings and one- and two-bond dipolar couplings provides narrow signals and long-range, intra- and inter-residue, recoupling essential for distance constraints. Inverse redox labeling, from [2-(13)C] acetate, is also expected to be useful: although it retains one-bond couplings in the sidechains, the removal of CA-CO coupling in the backbone should improve the resolution of NCACX spectra.

Indexed as

Isotope LabelingNuclear Magnetic Resonance, BiomolecularBacterial ProteinsCrystallizationMass SpectrometryOxidation-ReductionPeptonesProtein Structure, TertiaryBacterial ProteinsIgG Fc-binding protein, StreptococcusPeptones

Identifiers

PMID23990199
PMCPMC3793012
OpenAlexW2224368302

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.