Evidence map›Paper›PMID 23989729›Full record

ArticleJAMA2013

Plasma lipids, genetic variants near APOA1, and the risk of infantile hypertrophic pyloric stenosis.

Bjarke Feenstra, Frank Geller, Lisbeth Carstensen, Paul A Romitti, Izabella Baranowska Körberg, Bruce Bedell, Camilla Krogh, Ruzong Fan, Anna Svenningsson, Michele Caggana and 4 more

Abstract read
In one paragraph

Article in JAMA, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 33 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Integrating genetics with newborn metabolomics in infantile hypertrophic pyloric stenosis.Metabolomics : Official journal of the Metabolomic Society · 2021
    Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 3 countries.

Bjarke FeenstraDepartment of Epidemiology Research, Statens Serum Institut, Copenhagen, Denmark. fee@ssi.dk
Frank Geller
Lisbeth Carstensen
Paul A Romitti
Izabella Baranowska Körberg
Bruce Bedell
Camilla Krogh
Ruzong Fan
Anna Svenningsson
Michele Caggana
Agneta Nordenskjöld
James L Mills
Jeffrey C Murray
Mads Melbye
Statens Serum Institut · DKKarolinska Institutet · SEUniversity of Iowa · USEunice Kennedy Shriver National Institute of Child Health and Human Development · USNew York State Department of Health · US

Funding

Pulmonary Toxicology Facility CoreP30ES005605 · NIEHS · UNIVERSITY OF IOWA · PI Brandi Janssen · 1990 to 2026
$40.5M
Genetic Factors in Birth DefectsZIAHD008792 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI MILLS, JAMES · 2009 to 2023
$5.0M
Iowa Center for Birth Defects Research and Prevention (ICBDRP)U01DD000492 · DD · UNIVERSITY OF IOWA · PI ROMITTI, PAUL A · 2009 to 2013
$3.9M
Genome-wide association studies of prematurity and its complicationsU01HG004423 · NHGRI · UNIVERSITY OF IOWA · PI MURRAY, JEFFREY C · 2007 to 2010
$1.5M
Intramural NIH HHSMedical Research Council G1001799NCBDD CDC HHS 5U01DD000492NCBDD CDC HHS U01 DD000492NHGRI NIH HHS U01 HG004423NHGRI NIH HHS U01HG004423NIEHS NIH HHS P30 ES005605
6 · The paper itself

Abstract

importanceInfantile hypertrophic pyloric stenosis (IHPS) is a serious condition in which hypertrophy of the pyloric sphincter muscle layer leads to gastric outlet obstruction. Infantile hypertrophic pyloric stenosis shows strong familial aggregation and heritability, but knowledge about specific genetic risk variants is limited.

objectivesTo search the genome comprehensively for genetic associations with IHPS and validate findings in 3 independent sample sets. DESIGN, SETTING, AND

participantsDuring stage 1, we used reference data from the 1000 Genomes Project for imputation into a genome-wide data set of 1001 Danish surgery-confirmed samples (cases diagnosed 1987-2008) and 2371 disease-free controls. In stage 2, the 5 most significantly associated loci were tested in independent case-control sample sets from Denmark (cases diagnosed 1983-2010), Sweden (cases diagnosed 1958-2011), and the United States (cases diagnosed 1998-2005), with a total of 1663 cases and 2315 controls. MAIN OUTCOMES AND MEASURES: Association of genetic variation with the presence of infantile hypertrophic pyloric stenosis.

resultsWe found a new genome-wide significant locus for IHPS at chromosome 11q23.3. The single-nucleotide polymorphism (SNP) with the lowest P value at the locus, rs12721025 (odds ratio [OR], 1.59; 95% CI, 1.38-1.83; P = 1.9 × 10(-10)), is located 301 bases downstream of the apolipoprotein A-I (APOA1) gene and is correlated (r2 between 0.46 and 0.80) with SNPs previously found to be associated with levels of circulating cholesterol. For these SNPs, the cholesterol-lowering allele consistently was associated with increased risk of IHPS. CONCLUSIONS AND RELEVANCE: This study identified a new genome-wide significant locus for IHPS. Characteristics of this locus suggest the possibility of an inverse relationship between levels of circulating cholesterol in neonates and IHPS risk, which warrants further investigation.

Indexed as

Genome-Wide Association StudyApolipoprotein A-ICase-Control StudiesCholesterolDenmarkFemaleGenotypeHumansInfantInfant, NewbornInfant, Newborn, DiseasesMaleOdds RatioPolymorphism, Single NucleotidePyloric Stenosis, HypertrophicRiskAPOA1 protein, humanApolipoprotein A-ICholesterol

Identifiers

PMID23989729
PMCPMC4031654
OpenAlexW2103162746

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.