Evidence map›Paper›PMID 23989143›Full record

ArticleActa crystallographica. Section F, Structural biology and crystallization communications2013

The structure of amylosucrase from Deinococcus radiodurans has an unusual open active-site topology.

Lars K Skov, Sandra Pizzut-Serin, Magali Remaud-Simeon, Heidi A Ernst, Michael Gajhede, Osman Mirza

Abstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology and crystallization communications, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.1field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
  2. Mining and Characterization of Amylosucrase fromInternational journal of molecular sciences · 2024
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  4. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

Lars K SkovNovozymes A/S, Krogshøjvej 36, DK-2880 Bagsværd, Denmark.
Sandra Pizzut-Serin
Magali Remaud-Simeon
Heidi A Ernst
Michael Gajhede
Osman Mirza
University of Copenhagen · DKCentre National de la Recherche Scientifique · FRNovozymes (Denmark) · DKUniversité Toulouse III - Paul Sabatier · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Amylosucrases (ASes) catalyze the formation of an α-1,4-glucosidic linkage by transferring a glucosyl unit from sucrose onto an acceptor α-1,4-glucan. To date, several ligand-bound crystal structures of wild-type and mutant ASes from Neisseria polysaccharea and Deinococcus geothermalis have been solved. These structures all display a very similar overall conformation with a deep pocket leading to the site for transglucosylation, subsite -1. This has led to speculation on how sucrose enters the active site during glucan elongation. In contrast to previous studies, the AS structure from D. radiodurans presented here has a completely empty -1 subsite. This structure is strikingly different from other AS structures, as an active-site-lining loop comprising residues Leu214-Asn225 is found in a previously unobserved conformation. In addition, a large loop harbouring the conserved active-site residues Asp133 and Tyr136 is disordered. The result of the changed loop conformations is that the active-site topology is radically changed, leaving subsite -1 exposed and partially dismantled. This structure provides novel insights into the dynamics of ASes and comprises the first structural support for an elongation mechanism that involves considerable conformational changes to modulate accessibility to the sucrose-binding site and thereby allows successive cycles of glucosyl-moiety transfer to a growing glucan chain.

Indexed as

Bacterial ProteinsCatalytic DomainCrystallography, X-RayDeinococcusEscherichia coliGlucansGlucosyltransferasesModels, MolecularProtein BindingProtein MultimerizationProtein Structure, SecondaryRecombinant ProteinsSubstrate SpecificitySucrose1,4-glucanamylosucraseBacterial ProteinsGlucansGlucosyltransferasesRecombinant ProteinsSucroseactive-site topologyamylosucraseGH13glucan synthesis

Identifiers

PMID23989143
PMCPMC3758143
OpenAlexW2011077691

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.