Evidence map›Paper›PMID 23989005›Full record

ArticleAmerican journal of physiology. Gastrointestinal and liver physiology2013

Irgm1-deficient mice exhibit Paneth cell abnormalities and increased susceptibility to acute intestinal inflammation.

Bo Liu, Ajay S Gulati, Viviana Cantillana, Stanley C Henry, Elyse A Schmidt, Xiaoju Daniell, Emily Grossniklaus, Alexi A Schoenborn, R Balfour Sartor, Gregory A Taylor

Open access · greenAbstract read
In one paragraph

Article in American journal of physiology. Gastrointestinal and liver physiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 107 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
107citing papers in PubMed, 1 pooled it
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

107 citing papers in PubMed, 1 synthesis or guideline pooled it, 146 citations in OpenAlex.

  1. Role of Mitochondria in Inflammatory Bowel Diseases: A Systematic Review.International journal of molecular sciences · 2023
    Pooled it
  2. Review
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  13. Article
  14. Article
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  17. Autophagy and Bacterial infections.Autophagy reports · 2025
    Review
  18. Review
  19. Article
  20. Review

47 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Bo LiuPO Box 3003, Duke Univ. Medical Center, Durham, NC 27710. taylo018@mc.duke.edu.
Ajay S Gulati
Viviana Cantillana
Stanley C Henry
Elyse A Schmidt
Xiaoju Daniell
Emily Grossniklaus
Alexi A Schoenborn
R Balfour Sartor
Gregory A Taylor
University of North Carolina at Chapel Hill · USDuke University · USDuke University Hospital · USDurham VA Medical Center · US

Funding

PILOT AND FEASIBILITY STUDIESP30DK034987 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ROBERT S. SANDLER · 1985 to 2026
$30.5M
National Gnotobiotic Rodent Resource CenterP40OD010995 · OD · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Ryan B Sartor · 2012 to 2026
$9.7M
Colitis Induced by immune responses to luminal bacteria-mouseR01DK053347 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SARTOR, RYAN B · 1998 to 2012
$4.6M
Regulation of IFN-g-induced Innate Immunity by LRG-47R01AI057831 · NIAID · DUKE UNIVERSITY · PI TAYLOR, GREGORY A · 2004 to 2013
$3.1M
Paneth cell dysfunction and gut dysbiosis in experimental intestinal inflammationK08DK095917 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI GULATI, AJAY S · 2012 to 2014
$463k
IRS-1 PTB DOMAIN STRUCTURE AND FUNCTIONF32DK009517 · NIDDK · JOSLIN DIABETES CENTER · PI DHE-PAGANON, SIRANO · 1996 to 1998
–
NIAID NIH HHS AI-57831NIAID NIH HHS R01 AI057831NIDDK NIH HHS DK-034987NIDDK NIH HHS DK-053347NIDDK NIH HHS K08 DK-09517NIDDK NIH HHS K08 DK095917NIDDK NIH HHS P30 DK034987
6 · The paper itself

Abstract

Crohn's disease (CD) is a chronic, immune-mediated, inflammatory disorder of the intestine that has been linked to numerous susceptibility genes, including the immunity-related GTPase (IRG) M (IRGM). IRGs comprise a family of proteins known to confer resistance to intracellular infections through various mechanisms, including regulation of phagosome processing, cell motility, and autophagy. However, despite its association with CD, the role of IRGM and other IRGs in regulating intestinal inflammation is unclear. We investigated the involvement of Irgm1, an ortholog of IRGM, in the genesis of murine intestinal inflammation. After dextran sodium sulfate exposure, Irgm1-deficient [Irgm1 knockout (KO)] mice showed increased acute inflammation in the colon and ileum, with worsened clinical responses. Marked alterations of Paneth cell location and granule morphology were present in Irgm1 KO mice, even without dextran sodium sulfate exposure, and were associated with impaired mitophagy and autophagy in Irgm1 KO intestinal cells (including Paneth cells). This was manifested by frequent tubular and swollen mitochondria and increased LC3-positive autophagic structures. Interestingly, these LC3-positive structures often contained Paneth cell granules. These results suggest that Irgm1 modulates acute inflammatory responses in the mouse intestine, putatively through the regulation of gut autophagic processes, that may be pivotal for proper Paneth cell functioning.

Indexed as

AnimalsAutophagyColitisDextran SulfateFemaleGene Expression RegulationGTP-Binding ProteinsIleitisInflammationMaleMiceMice, KnockoutMitophagyPaneth CellsDextran SulfateGTP-Binding ProteinsIfi1 protein, mouseautophagyexperimental colitisimmunity-related GTPases

Identifiers

PMID23989005
PMCPMC3798734
OpenAlexW2061869990

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.