Evidence map›Paper›PMID 23988329›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Previously unknown role for the ubiquitin ligase Ubr1 in endoplasmic reticulum-associated protein degradation.

Alexandra Stolz, Stefanie Besser, Heike Hottmann, Dieter H Wolf

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
3.3field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 63 citations in OpenAlex.

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  17. Protein quality control in the secretory pathway.The Journal of cell biology · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Alexandra StolzInstitut für Biochemie, Universität Stuttgart, 70569 Stuttgart, Germany.
Stefanie Besser
Heike Hottmann
Dieter H Wolf
University of Stuttgart · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Quality control and degradation of misfolded proteins are essential processes of all cells. The endoplasmic reticulum (ER) is the entry site of proteins into the secretory pathway in which protein folding occurs and terminally misfolded proteins are recognized and retrotranslocated across the ER membrane into the cytosol. Here, proteins undergo polyubiquitination by one of the membrane-embedded ubiquitin ligases, in yeast Hrd1/Der3 (HMG-CoA reductase degradation/degradation of the ER) and Doa10 (degradation of alpha), and are degraded by the proteasome. In this study, we identify cytosolic Ubr1 (E3 ubiquitin ligase, N-recognin) as an additional ubiquitin ligase that can participate in ER-associated protein degradation (ERAD) in yeast. We show that two polytopic ERAD substrates, mutated transporter of the mating type a pheromone, Ste6* (sterile), and cystic fibrosis transmembrane conductance regulator, undergo Ubr1-dependent degradation in the presence and absence of the canonical ER ubiquitin ligases. Whereas in the case of Ste6* Ubr1 is specifically required under stress conditions such as heat or ethanol or in the absence of the canonical ER ligases, efficient degradation of human cystic fibrosis transmembrane conductance regulator requires function of Ubr1 already in wild-type cells under standard growth conditions. Together with the Hsp70 (heat shock protein) chaperone Ssa1 (stress-seventy subfamily A) and the AAA-type ATPase Cdc48 (cell division cycle), Ubr1 directs the substrate to proteasomal degradation. These data unravel another layer of complexity in ERAD.

Indexed as

Adaptor Proteins, Signal TransducingAdenosine TriphosphatasesBlotting, WesternCell Cycle ProteinsCystic Fibrosis Transmembrane Conductance RegulatorElectrophoresis, Polyacrylamide GelEndoplasmic ReticulumEndoplasmic Reticulum-Associated DegradationFlow CytometryHSP70 Heat-Shock ProteinsHumansImmunoprecipitationProtein FoldingSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsUbiquitinationAdaptor Proteins, Signal TransducingAdenosine TriphosphatasesCDC48 protein, S cerevisiaeCell Cycle ProteinsCystic Fibrosis Transmembrane Conductance RegulatorHSP70 Heat-Shock ProteinsSaccharomyces cerevisiae ProteinsSSA1 protein, S cerevisiaeSTE5 protein, S cerevisiaeUbiquitin-Protein LigasesUBR1 protein, S cerevisiaeValosin Containing Proteinheat shockprotein quality controlstress response

Identifiers

PMID23988329
PMCPMC3780849
OpenAlexW2037436065

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.