Evidence map›Paper›PMID 23986447›Full record

ArticleThe Journal of biological chemistry2013

Control of DNA replication by the nucleus/cytoplasm ratio in Xenopus.

Christopher M Murphy, W Matthew Michael

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
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  11. Article
  12. Review
  13. Cell-Size Control.Cold Spring Harbor perspectives in biology · 2016
    Review
  14. Use of Xenopus cell-free extracts to study size regulation of subcellular structures.The International journal of developmental biology · 2016
    Review
  15. Cell cycle control in the early embryonic development of aquatic animal species.Comparative biochemistry and physiology. Toxicology & pharmacology : CBP · 2015
    Review
  16. Histone titration against the genome sets the DNA-to-cytoplasm threshold for the Xenopus midblastula transition.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Christopher M MurphyFrom the Molecular and Computational Biology Section, Department of Biological Sciences, University of Southern California, Los Angeles, California 90089 and.
W Matthew Michael
Harvard University · USUniversity of Southern California · US

Funding

The role of Mus101 in maintenance of genome stabilityR01GM067735 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI MICHAEL, MATTHEW · 2003 to 2012
$3.0M
NIGMS NIH HHS GM067735NIGMS NIH HHS R01 GM067735
6 · The paper itself

Abstract

The nucleus/cytoplasm (N/C) ratio controls S phase dynamics in many biological systems, most notably the abrupt remodeling of the cell cycle that occurs at the midblastula transition in early Xenopus laevis embryos. After an initial series of rapid cleavage cycles consisting only of S and M phases, a critical N/C ratio is reached, which causes a sharp increase in the length of S phase as the cell cycle is reconfigured to resemble somatic cell cycles. How the N/C ratio determines the length of S phase has been a longstanding problem in developmental biology. Using Xenopus egg extracts, we show that DNA replication at high N/C ratio is restricted by one or more limiting substances. We report here that the protein phosphatase PP2A, in conjunction with its B55α regulatory subunit, becomes limiting for replication origin firing at high N/C ratio, and this in turn leads to reduced origin activation and an increase in the time required to complete S phase. Increasing the levels of PP2A catalytic subunit or B55α experimentally restores rapid DNA synthesis at high N/C ratio. Inversely, reduction of PP2A or B55α levels sharply extends S phase even in low N/C extracts. These results identify PP2A-B55α as a link between DNA replication and N/C ratio in egg extracts and suggest a mechanism that may influence the onset of the midblastula transition in vivo.

Indexed as

DNA ReplicationAnimalsAtaxia Telangiectasia Mutated ProteinsCell ExtractsCell NucleusCheckpoint Kinase 1CytoplasmFemaleImmunoblottingMaleOvumPhosphorylationProtein KinasesProtein Phosphatase 2Protein SubunitsSignal TransductionAtaxia Telangiectasia Mutated ProteinsAtr protein, XenopusCell ExtractsCheckpoint Kinase 1ppp2r2a protein, Xenopus laevisProtein KinasesProtein Phosphatase 2Protein SubunitsXenopus ProteinsB55αCell CycleCheckpoint ControlCheckpoint KinaseDNA ReplicationMidblastula TransitionNucleus/Cytoplasm RatioPP2AXenopus

Identifiers

PMID23986447
PMCPMC3795239
OpenAlexW2128744588

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.