Evidence map›Paper›PMID 23984855›Full record

ArticleBiochemistry2013

DEER EPR measurements for membrane protein structures via bifunctional spin labels and lipodisq nanoparticles.

Indra D Sahu, Robert M McCarrick, Kaylee R Troxel, Rongfu Zhang, Hubbell J Smith, Megan M Dunagan, Max S Swartz, Prashant V Rajan, Brett M Kroncke, Charles R Sanders and 1 more

Abstract read
In one paragraph

Article in Biochemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed.

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  11. Pinholin SBiochimica et biophysica acta. Biomembranes · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Indra D SahuDepartment of Chemistry and Biochemistry, Miami University , Oxford, Ohio 45056, United States.
Robert M McCarrick
Kaylee R Troxel
Rongfu Zhang
Hubbell J Smith
Megan M Dunagan
Max S Swartz
Prashant V Rajan
Brett M Kroncke
Charles R Sanders
Gary A Lorigan

Funding

Structural Basis for KCNE Modulation of the KCNQ1 ChannelR01DC007416 · NIDCD · VANDERBILT UNIVERSITY · PI SANDERS, CHARLES R, VANOYE, CARLOS G. · 2006 to 2014
$3.0M
EPR and Solid-State NMR Studies of Integral Membrane ProteinsR01GM080542 · NIGMS · MIAMI UNIVERSITY OXFORD · PI LORIGAN, GARY A · 2007 to 2011
$1.6M
EPR Structural Studies of KCNE1/KCNQ1R01GM108026 · NIGMS · MIAMI UNIVERSITY OXFORD · PI LORIGAN, GARY A · 2013 to 2016
$1.3M
NIDCD NIH HHS R01 DC007416NIGMS NIH HHS R01 GM080542NIGMS NIH HHS R01 GM108026
6 · The paper itself

Abstract

Pulsed EPR DEER structural studies of membrane proteins in a lipid bilayer have often been hindered by difficulties in extracting accurate distances when compared to those of globular proteins. In this study, we employed a combination of three recently developed methodologies, (1) bifunctional spin labels (BSL), (2) SMA-Lipodisq nanoparticles, and (3) Q band pulsed EPR measurements, to obtain improved signal sensitivity, increased transverse relaxation time, and more accurate and precise distances in DEER measurements on the integral membrane protein KCNE1. The KCNE1 EPR data indicated an ∼2-fold increase in the transverse relaxation time for the SMA-Lipodisq nanoparticles when compared to those of proteoliposomes and narrower distance distributions for the BSL when compared to those of the standard MTSL. The certainty of information content in DEER data obtained for KCNE1 in SMA-Lipodisq nanoparticles is comparable to that in micelles. The combination of techniques will enable researchers to potentially obtain more precise distances in cases where the traditional spin labels and membrane systems yield imprecise distance distributions.

Indexed as

Cyclic N-OxidesElectron Spin Resonance SpectroscopyLipid BilayersMembrane ProteinsMesylatesNanoparticlesPotassium Channels, Voltage-GatedSpin Labels(1-oxyl-2,2,5,5-tetramethylpyrroline-3-methyl)methanethiosulfonate3,4-bis(methanethiosulfonylmethyl)-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-1-yloxyCyclic N-OxidesLipid BilayersMembrane ProteinsMesylatesPotassium Channels, Voltage-GatedSpin Labels

Identifiers

PMID23984855
PMCPMC3826088

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.