Evidence map›Paper›PMID 23984834›Full record

ArticleBiochemistry2013

Conservation of apolipoprotein A-I's central domain structural elements upon lipid association on different high-density lipoprotein subclasses.

Michael N Oda, Madhu S Budamagunta, Ethan G Geier, Sajiv H Chandradas, Baohai Shao, Jay W Heinecke, John C Voss, Giorgio Cavigiolio

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.8field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Trial
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Michael N OdaChildren's Hospital Oakland Research Institute , Oakland, California 94609, United States.
Madhu S Budamagunta
Ethan G Geier
Sajiv H Chandradas
Baohai Shao
Jay W Heinecke
John C Voss
Giorgio Cavigiolio
University of California, Davis · USUniversity of Washington · US

Funding

Vector and Transgenic Mouse CoreP30DK017047 · NIDDK · UNIVERSITY OF WASHINGTON · PI Tomas Vaisar · 1986 to 2026
$41.4M
Quantitative Assessment of HDL FunctionR01HL112625 · NHLBI · UNIVERSITY OF WASHINGTON · PI HEINECKE, JAY W · 2012 to 2016
$2.1M
Structure of apolipoprotein A-I on defined states of HDLR01HL077268 · NHLBI · CHILDREN'S HOSPITAL &RES CTR AT OAKLAND · PI ODA, MICHAEL NOBUAKI · 2004 to 2010
$2.0M
Impact of self-association on structure and function of apolipoprotein A-IR01HL113059 · NHLBI · CHILDREN'S HOSPITAL & RES CTR AT OAKLAND · PI CAVIGIOLIO, GIORGIO · 2012 to 2016
$2.0M
Cardioprotective Mechanisms of HDLR01HL108897 · NHLBI · UNIVERSITY OF WASHINGTON · PI HEINECKE, JAY W · 2012 to 2015
$1.7M
Anti-inflammatory properties of high-density lipoproteinR00HL091055 · NHLBI · UNIVERSITY OF WASHINGTON · PI SHAO, BAOHAI · 2010 to 2012
$747k
Anti-inflammatory properties of high-density lipoproteinK99HL091055 · NHLBI · UNIVERSITY OF WASHINGTON · PI SHAO, BAOHAI · 2008 to 2009
$180k
NHLBI NIH HHS HL091055NHLBI NIH HHS HL113059NHLBI NIH HHS HL77268NHLBI NIH HHS K99 HL091055NHLBI NIH HHS R00 HL091055NHLBI NIH HHS R01 HL077268NHLBI NIH HHS R01 HL108897NHLBI NIH HHS R01 HL112625NHLBI NIH HHS R01 HL113059NIDDK NIH HHS P30 DK017047
6 · The paper itself

Abstract

The antiatherogenic properties of apolipoprotein A-I (apoA-I) are derived, in part, from lipidation-state-dependent structural elements that manifest at different stages of apoA-I's progression from lipid-free protein to spherical high-density lipoprotein (HDL). Previously, we reported the structure of apoA-I's N-terminus on reconstituted HDLs (rHDLs) of different sizes. We have now investigated at the single-residue level the conformational adaptations of three regions in the central domain of apoA-I (residues 119-124, 139-144, and 164-170) upon apoA-I lipid binding and HDL formation. An important function associated with these residues of apoA-I is the activation of lecithin:cholesterol acyltransferase (LCAT), the enzyme responsible for catalyzing HDL maturation. Structural examination was performed by site-directed tryptophan fluorescence and spin-label electron paramagnetic resonance spectroscopies for both the lipid-free protein and rHDL particles 7.8, 8.4, and 9.6 nm in diameter. The two methods provide complementary information about residue side chain mobility and molecular accessibility, as well as the polarity of the local environment at the targeted positions. The modulation of these biophysical parameters yielded new insight into the importance of structural elements in the central domain of apoA-I. In particular, we determined that the loosely lipid-associated structure of residues 134-145 is conserved in all rHDL particles. Truncation of this region completely abolished LCAT activation but did not significantly affect rHDL size, reaffirming the important role of this structural element in HDL function.

Indexed as

Apolipoprotein A-IElectron Spin Resonance SpectroscopyHumansLipoproteins, HDLProtein Structure, TertiaryRecombinant ProteinsApolipoprotein A-ILipoproteins, HDLRecombinant Proteins

Identifiers

PMID23984834
PMCPMC3835726
OpenAlexW2046132373

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.