Evidence map›Paper›PMID 23983612›Full record

ArticleInternational journal of biological sciences2013

Exploring valid reference genes for quantitative real-time PCR analysis in Plutella xylostella (Lepidoptera: Plutellidae).

Wei Fu, Wen Xie, Zhuo Zhang, Shaoli Wang, Qingjun Wu, Yong Liu, Xiaomao Zhou, Xuguo Zhou, Youjun Zhang

Abstract read
In one paragraph

Article in International journal of biological sciences, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 105 papers.

0numbers the graph read from it
0cells of the map it votes in
105citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

105 citing papers in PubMed.

  1. Article
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  3. Selection and Validation of Stable Reference Genes for RT-qPCR inInternational journal of molecular sciences · 2026
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  15. MicroRNA Targets PAP1 to Mediate Melanization inInternational journal of molecular sciences · 2024
    Article
  16. Article
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45 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

9 authors.

Wei FuInstitute of Pesticide Science, Hunan Agricultural University, Changsha 410128, China.
Wen Xie
Zhuo Zhang
Shaoli Wang
Qingjun Wu
Yong Liu
Xiaomao Zhou
Xuguo Zhou
Youjun Zhang

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Quantitative real-time PCR (qRT-PCR), a primary tool in gene expression analysis, requires an appropriate normalization strategy to control for variation among samples. The best option is to compare the mRNA level of a target gene with that of reference gene(s) whose expression level is stable across various experimental conditions. In this study, expression profiles of eight candidate reference genes from the diamondback moth, Plutella xylostella, were evaluated under diverse experimental conditions. RefFinder, a web-based analysis tool, integrates four major computational programs including geNorm, Normfinder, BestKeeper, and the comparative ΔCt method to comprehensively rank the tested candidate genes. Elongation factor 1 (EF1) was the most suited reference gene for the biotic factors (development stage, tissue, and strain). In contrast, although appropriate reference gene(s) do exist for several abiotic factors (temperature, photoperiod, insecticide, and mechanical injury), we were not able to identify a single universal reference gene. Nevertheless, a suite of candidate reference genes were specifically recommended for selected experimental conditions. Our finding is the first step toward establishing a standardized qRT-PCR analysis of this agriculturally important insect pest.

Indexed as

AnimalsGene Expression ProfilingGenesMothsPeptide Elongation Factor 1Real-Time Polymerase Chain ReactionReference ValuesPeptide Elongation Factor 1abiotic factor.biotic factorPlutella xylostellaqRT-PCR analysisreference gene

Identifiers

PMID23983612
PMCPMC3753443

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.