Evidence map›Paper›PMID 23980583›Full record

ArticleBiochemistry2013

Axial ligand replacement mechanism in heme transfer from streptococcal heme-binding protein Shp to HtsA of the HtsABC transporter.

Yanchao Ran, G Reza Malmirchegini, Robert T Clubb, Benfang Lei

Abstract read
In one paragraph

Article in Biochemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
3.9field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 15 citations in OpenAlex.

  1. TheThe Journal of biological chemistry · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Yanchao RanDepartment of Immunology and Infectious Diseases, Montana State University , Bozeman, Montana 59718, United States.
G Reza Malmirchegini
Robert T Clubb
Benfang Lei
Montana State University · USUniversity of California, Los Angeles · US

Funding

VIRUSES: FROM PARTICLES TO PROTEOMICSP20RR020185 · NCRR · MONTANA STATE UNIVERSITY - BOZEMAN · PI BATTISTI, JAMES MICHAEL · 2004 to 2011
$17.0M
Cell Surface Protein Anchoring in Gram-Positive BacteriaR01AI052217 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Robert Thompson Clubb · 2002 to 2026
$8.5M
Pilot Grants ProgramP30GM110732 · NIGMS · MONTANA STATE UNIVERSITY - BOZEMAN · PI QUINN, MARK T · 2014 to 2018
$5.4M
Center for Zoonotic and Emerging Infectious DiseasesP20GM103500 · NIGMS · MONTANA STATE UNIVERSITY - BOZEMAN · PI QUINN, MARK T · 2012 to 2013
$4.2M
Evasion of Innate Immunity by Group A StreptococcusR01AI095704 · NIAID · MONTANA STATE UNIVERSITY - BOZEMAN · PI LEI, BENFANG · 2012 to 2016
$1.8M
Vaccine and therapeutic antibodies against Group A StreptococcusR21AI097703 · NIAID · MONTANA STATE UNIVERSITY - BOZEMAN · PI LEI, BENFANG · 2012 to 2013
$385k
Heme Acquisition in Group A StreptococcusK22AI057347 · NIAID · MONTANA STATE UNIVERSITY (BOZEMAN) · PI LEI, BENFANG · 2004 to 2005
$270k
NCRR NIH HHS P20 RR020185NIAID NIH HHS AI095704NIAID NIH HHS AI097703NIAID NIH HHS AI52217NIAID NIH HHS K22 AI057347NIAID NIH HHS R01 AI052217NIAID NIH HHS R01 AI095704NIAID NIH HHS R21 AI097703NIGMS NIH HHS GM103500-09NIGMS NIH HHS P20 GM103500NIGMS NIH HHS P30 GM110732
6 · The paper itself

Abstract

The heme-binding protein Shp of Group A Streptococcus rapidly transfers its heme to HtsA, the lipoprotein component of the HtsABC transporter, in a concerted two-step process with one kinetic phase. Heme axial residue-to-alanine replacement mutant proteins of Shp and HtsA (Shp(M66A), Shp(M153A), HtsA(M79A), and HtsA(H229A)) were used to probe the axial displacement mechanism of this heme transfer reaction. Ferric Shp(M66A) at high pH and Shp(M153A) have a pentacoordinate heme iron complex with a methionine axial ligand. ApoHtsA(M79A) efficiently acquires heme from ferric Shp but alters the reaction mechanism to two kinetic phases from a single phase in the wild-type protein reactions. In contrast, apoHtsA(H229A) cannot assimilate heme from ferric Shp. The conversion of pentacoordinate holoShp(M66A) into pentacoordinate holoHtsA(H229A) involves an intermediate, whereas holoHtsA(H229A) is directly formed from pentacoordinate holoShp(M153A). Conversely, apoHtsA(M79A) reacts with holoShp(M66A) and holoShp(M153A) in mechanisms with one and two kinetic phases, respectively. These results imply that the Met79 and His229 residues of HtsA displace the Met66 and Met153 residues of Shp, respectively. Structural docking analysis supports this mechanism of the specific axial residue displacement. Furthermore, the rates of the cleavage of the axial bond in Shp in the presence of a replacing HtsA axial residue are greater than that in the absence of a replacing HtsA axial residue. These findings reveal a novel heme transfer mechanism of the specific displacement of the Shp axial residues with the HtsA axial residues and the involvement of the HtsA axial residues in the displacement.

Indexed as

ATP-Binding Cassette TransportersCarrier ProteinsCircular DichroismHemeHeme-Binding ProteinsHemeproteinsHydrogen-Ion ConcentrationImidazolesKineticsLigandsStreptococcus pyogenesATP-Binding Cassette TransportersCarrier ProteinsHemeHeme-Binding ProteinsHemeproteinsimidazoleImidazolesLigands

Identifiers

PMID23980583
PMCPMC3815476
OpenAlexW1986742842

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.