Evidence map›Paper›PMID 23980157›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

H3R42me2a is a histone modification with positive transcriptional effects.

Fabio Casadio, Xiangdong Lu, Samuel B Pollock, Gary LeRoy, Benjamin A Garcia, Tom W Muir, Robert G Roeder, C David Allis

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed
7.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed, 150 citations in OpenAlex.

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  11. The emerging role of CARM1 in cancer.Cellular oncology (Dordrecht, Netherlands) · 2024
    Review
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14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Fabio CasadioLaboratory of Chromatin Biology and Epigenetics, The Rockefeller University, New York, NY 10065.
Xiangdong Lu
Samuel B Pollock
Gary LeRoy
Benjamin A Garcia
Tom W Muir
Robert G Roeder
C David Allis
Rockefeller University · USPrinceton University · USUniversity of Pennsylvania · US

Funding

TRANSGENIC COREP01DA008227 · NIDA · YALE UNIVERSITY · PI NESTLER, ERIC J. · 1993 to 2018
$28.1M
REPRESSIVE HISTONE AND DNA METHYLATION IN RODENT DEPRESSION MODELSP50MH096890 · NIMH · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI TAMMINGA, CAROL A · 2012 to 2021
$20.2M
Mechanisms of p53 target gene activation in DNA damage responsesR01CA129325 · NCI · ROCKEFELLER UNIVERSITY · PI ROEDER, ROBERT G · 2007 to 2011
$4.0M
Novel Methodology for Quantitative High-throughput Cancer EpigeneticsDP2OD007447 · OD · UNIVERSITY OF PENNSYLVANIA · PI GARCIA, BENJAMIN A · 2010 to 2010
$2.4M
Dynamic Regulation of Methyl-arginine and Citrulline in Breast Cancer CellsR01GM098870 · NIGMS · ROCKEFELLER UNIVERSITY · PI ALLIS, CHARLES DAVID · 2011 to 2014
$1.5M
Development and Applications of 'Designer Chromatin'R01GM107047 · NIGMS · PRINCETON UNIVERSITY · PI MUIR, TOM · 2013 to 2016
$1.2M
NCI NIH HHS CA-129325NCI NIH HHS R01 CA129325NIDA NIH HHS P01 DA008227NIGMS NIH HHS GM-098870NIGMS NIH HHS R01 GM098870NIGMS NIH HHS R01 GM107047NIH HHS DP2 OD007447NIMH NIH HHS P50 MH096890
6 · The paper itself

Abstract

Histone posttranslational modification leads to downstream effects indirectly by allowing or preventing docking of effector molecules, or directly by changing the intrinsic biophysical properties of local chromatin. To date, little has been done to study posttranslational modifications that lie outside of the unstructured tail domains of histones. Core residues, and in particular arginines in H3 and H4, mediate key interactions between the histone octamer and DNA in forming the nucleosomal particle. Using mass spectrometry, we find that one of these core residues, arginine 42 of histone H3 (H3R42), is dimethylated in mammalian cells by the methyltransferases coactivator arginine methyltransferase 1 (CARM1) and protein arginine methyltransferase 6 (PRMT6) in vitro and in vivo, and we demonstrate that methylation of H3R42 stimulates transcription in vitro from chromatinized templates. Thus, H3R42 is a new, "nontail" histone methylation site with positive effects on transcription. We propose that methylation of basic histone residues at the DNA interface may disrupt histone:DNA interactions, with effects on downstream processes, notably transcription.

Indexed as

Amino Acid SequenceAnimalsArginineGene Knockdown TechniquesHEK293 CellsHeLa CellsHistonesHumansMethylationMiceModels, MolecularMolecular Sequence DataNuclear ProteinsProtein-Arginine N-MethyltransferasesProtein ConformationProtein Processing, Post-TranslationalArgininecoactivator-associated arginine methyltransferase 1HistonesNuclear ProteinsPRMT6 protein, humanProtein-Arginine N-Methyltransferases

Identifiers

PMID23980157
PMCPMC3773778
OpenAlexW2051898903

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.