Evidence map›Paper›PMID 23979357›Full record

ArticleThe Journal of biological chemistry2013

The TREX1 C-terminal region controls cellular localization through ubiquitination.

Clinton D Orebaugh, Jason M Fye, Scott Harvey, Thomas Hollis, John C Wilkinson, Fred W Perrino

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
0.7field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 44 citations in OpenAlex.

  1. First case ofFrontiers in immunology · 2026
    Article
  2. Gigaxonin Potentiates Antiviral Innate Immune Responses by Targeting cGAS and TREX1.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  3. Article
  4. Article
  5. Suppression ofiScience · 2023
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. TREX1 as a Novel Immunotherapeutic Target.Frontiers in immunology · 2021
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Immune Diseases Associated with TREX1 and STING Dysfunction.Journal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Clinton D OrebaughFrom the Department of Biochemistry, Wake Forest School of Medicine, Winston-Salem, North Carolina 27157.
Jason M Fye
Scott Harvey
Thomas Hollis
John C Wilkinson
Fred W Perrino
Wake Forest University · US

Funding

Tumor Tissue CoreP30CA012197 · NCI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI Ruben A. Mesa · 1985 to 2026
$55.4M
Mechanisms of the 3'-5' deoxyribonucleasesR01GM069962 · NIGMS · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI PERRINO, FRED W · 2004 to 2012
$2.9M
NCI NIH HHS P30 CA012197NIGMS NIH HHS GM069962NIGMS NIH HHS R01 GM069962
6 · The paper itself

Abstract

TREX1 is an autonomous 3'-exonuclease that degrades DNA to prevent inappropriate immune activation. The TREX1 protein is composed of 314 amino acids; the N-terminal 242 amino acids contain the catalytic domain, and the C-terminal region (CTR) localizes TREX1 to the cytosolic compartment. In this study, we show that TREX1 modification by ubiquitination is controlled by a highly conserved sequence in the CTR to affect cellular localization. Transfection of TREX1 deletion constructs into human cells demonstrated that this sequence is required for ubiquitination at multiple lysine residues through a "non-canonical" ubiquitin linkage. A proteomic approach identified ubiquilin 1 as a TREX1 CTR-interacting protein, and this interaction was verified in vitro and in vivo. Cotransfection studies indicated that ubiquilin 1 localizes TREX1 to cytosolic punctate structures dependent upon the TREX1 CTR and lysines within the TREX1 catalytic core. Several TREX1 mutants linked to the autoimmune diseases Aicardi-Goutières syndrome and systemic lupus erythematosus that exhibit full catalytic function were tested for altered ubiquitin modification and cellular localization. Our data show that these catalytically competent disease-causing TREX1 mutants exhibit differential levels of ubiquitination relative to WT TREX1, suggesting a novel mechanism of dysfunction. Furthermore, these differentially ubiquitinated disease-causing mutants also exhibit altered ubiquilin 1 co-localization. Thus, TREX1 post-translational modification indicates an additional mechanism by which mutations disrupt TREX1 biology, leading to human autoimmune disease.

Indexed as

UbiquitinationAdaptor Proteins, Signal TransducingAutoimmune Diseases of the Nervous SystemAutophagy-Related ProteinsCarrier ProteinsCell Cycle ProteinsExodeoxyribonucleasesHEK293 CellsHumansLupus Erythematosus, SystemicLysineMutant ProteinsNervous System MalformationsPhosphoproteinsProtein BindingProtein Processing, Post-TranslationalAdaptor Proteins, Signal TransducingAutophagy-Related ProteinsCarrier ProteinsCell Cycle ProteinsExodeoxyribonucleasesLysineMutant ProteinsPhosphoproteinsthree prime repair exonuclease 1UBQLN1 protein, humanAutoimmune DiseasesDNADNA EnzymesNucleic AcidUbiquitination

Identifiers

PMID23979357
PMCPMC3789983
OpenAlexW2081596549

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.