Evidence map›Paper›PMID 23979139›Full record

ArticleThe Journal of biological chemistry2013

Physicochemical factors controlling the activity and energy coupling of an ionic strength-gated ATP-binding cassette (ABC) transporter.

Akira Karasawa, Lotteke J Y M Swier, Marc C A Stuart, Jos Brouwers, Bernd Helms, Bert Poolman

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Review
  2. Article
  3. Bacterial cell volume regulation and the importance of cyclic di-AMP.Microbiology and molecular biology reviews : MMBR · 2024
    Review
  4. Article
  5. Review
  6. Review
  7. Structural basis for heme detoxification by an ATP-binding cassette-type efflux pump in gram-positive pathogenic bacteria.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  8. Heterodimer Formation of the Homodimeric ABC Transporter OpuA.International journal of molecular sciences · 2021
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Microorganisms maintain crowding homeostasis.Nature reviews. Microbiology · 2017
    Review
  15. Article
  16. Article
  17. Article
  18. Bacterial responses to osmotic challenges.The Journal of general physiology · 2015
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Akira KarasawaFrom the Departments of Biochemistry and Biophysical Chemistry, Groningen Biomolecular Sciences and Biotechnology Institute, Netherlands Proteomics Centre.
Lotteke J Y M Swier
Marc C A Stuart
Jos Brouwers
Bernd Helms
Bert Poolman

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cells control their volume through the accumulation of compatible solutes. The bacterial ATP-binding cassette transporter OpuA couples compatible solute uptake to ATP hydrolysis. Here, we study the gating mechanism and energy coupling of OpuA reconstituted in lipid nanodiscs. We show that anionic lipids are essential both for the gating and the energy coupling. The tight coupling between substrate binding on extracellular domains and ATP hydrolysis by cytoplasmic nucleotide-binding domains allows the study of transmembrane signaling in nanodiscs. From the tight coupling between processes at opposite sides of the membrane, we infer that the ATPase activity of OpuA in nanodiscs reflects solute translocation. Intriguingly, the substrate-dependent, ionic strength-gated ATPase activity of OpuA in nanodiscs is at least an order of magnitude higher than in lipid vesicles (i.e. with identical membrane lipid composition, ionic strength, and nucleotide and substrate concentrations). Even with the chemical components the same, the lateral pressure (profile) of the nanodiscs will differ from that of the vesicles. We thus propose that membrane tension limits translocation in vesicular systems. Increased macromolecular crowding does not activate OpuA but acts synergistically with ionic strength, presumably by favoring gating interactions of like-charged surfaces via excluded volume effects.

Indexed as

Adenosine TriphosphatasesAdenosine TriphosphateATP-Binding Cassette TransportersBacterial ProteinsBiological TransportChemical PhenomenaChromatography, LiquidEnergy TransferHydrolysisLipid BilayersLiposomesMass SpectrometryMembrane LipidsNanostructuresOsmolar ConcentrationProteolipidsAdenosine TriphosphatasesAdenosine TriphosphateATP-Binding Cassette TransportersBacterial ProteinsLipid BilayersLiposomesMembrane LipidsOpuA protein, Lactococcus lactisProteolipidsproteoliposomesABC TransporterBC TransporterCell Volume RegulationEnergeticsGatingGating MechanismIonic StrengthMacromolecular CrowdingMembraneMembrane ReconstitutionMembrane Transport

Identifiers

PMID23979139
PMCPMC3795284

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.