Evidence map›Paper›PMID 23978718›Full record

ArticleJournal of hepatology2014

HLA-B*27 subtype specificity determines targeting and viral evolution of a hepatitis C virus-specific CD8+ T cell epitope.

Katja Nitschke, Alejandro Barriga, Julia Schmidt, Jörg Timm, Sergei Viazov, Thomas Kuntzen, Arthur Y Kim, Georg M Lauer, Todd M Allen, Silvana Gaudieri and 9 more

Abstract read
In one paragraph

Article in Journal of hepatology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Adaptive Immune Response against Hepatitis C Virus.International journal of molecular sciences · 2020
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Review
  13. Article
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  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Katja NitschkeDepartment of Medicine II, University of Freiburg, Freiburg, Germany; Faculty of Biology, University of Freiburg, Freiburg, Germany.
Alejandro BarrigaInstituto de Salud Carlos III, Majadahonda, Madrid, Spain.
Julia SchmidtDepartment of Medicine II, University of Freiburg, Freiburg, Germany.
Jörg TimmInstitute of Virology, University Hospital, University of Duisburg-Essen, Essen, Germany.
Sergei ViazovInstitute of Virology, University Hospital, University of Duisburg-Essen, Essen, Germany.
Thomas KuntzenRagon Institute of MGH, MIT and Harvard, Charlestown, MA, USA.
Arthur Y KimDivision of Infectious Diseases, MGH, Boston, MA, USA.
Georg M LauerDivision of Infectious Diseases, MGH, Boston, MA, USA.
Todd M AllenRagon Institute of MGH, MIT and Harvard, Charlestown, MA, USA.
Silvana GaudieriSchool of Anatomy, Physiology and Human Biology, University of Western Australia, Perth, Australia; Institute of Immunology and Infectious Disease, Murdoch University, Perth, Western Australia, Australia.
Andri RauchDepartment of Infectious Diseases, Bern University Hospital and University of Bern, Switzerland.
Christian M LangeDepartment of Medicine I, J.W. Goethe University Hospital, Frankfurt, Germany.
Christoph SarrazinDepartment of Medicine I, J.W. Goethe University Hospital, Frankfurt, Germany.
Thomas EiermannTransfusion Medicine, HLA-Laboratory, University Hospital Hamburg-Eppendorf, Hamburg, Germany.
John SidneyLa Jolla Institute for Allergy and Immunology, La Jolla, CA, USA.
Alessandro SetteLa Jolla Institute for Allergy and Immunology, La Jolla, CA, USA.
Robert ThimmeDepartment of Medicine II, University of Freiburg, Freiburg, Germany.
Daniel LópezInstituto de Salud Carlos III, Majadahonda, Madrid, Spain.
Christoph Neumann-HaefelinDepartment of Medicine II, University of Freiburg, Freiburg, Germany. Electronic address: christoph.neumann-haefelin@uniklinik-freiburg.de.

Funding

Virology CoreU19AI082630 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI RAYMOND T CHUNG, GEORG Michael LAUER · 2009 to 2026
$48.1M
The role of NK cells during acute HCV infection and antiviral therapyU19AI066345 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI LAUER, GEORG MICHAEL · 2005 to 2014
$8.5M
CD8 T Cell Selective Pressure and HCV Sequence EvolutionR01AI067926 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI ALLEN, TODD M · 2006 to 2009
$711k
NIAID NIH HHS R01 AI067926NIAID NIH HHS U19 AI066345NIAID NIH HHS U19 AI082630
6 · The paper itself

Abstract

BACKGROUND &

aimsHLA-B*27 is associated with spontaneous HCV genotype 1 clearance. HLA-B*27-restricted CD8+ T cells target three NS5B epitopes. Two of these epitopes are dominantly targeted in the majority of HLA-B*27+ patients. In chronic infection, viral escape occurs consistently in these two epitopes. The third epitope (NS5B2820) was dominantly targeted in an acutely infected patient. This was in contrast, however, to the lack of recognition and viral escape in the large majority of HLA-B*27+ patients. Here, we set out to determine the host factors contributing to selective targeting of this epitope.

methodsFour-digit HLA class I typing and viral sequence analyses were performed in 78 HLA-B*27+ patients with chronic HCV genotype 1 infection. CD8+ T cell analyses were performed in a subset of patients. In addition, HLA/peptide affinity was compared for HLA-B*27:02 and 05.

resultsThe NS5B2820 epitope is only restricted by the HLA-B*27 subtype HLA-B*27:02 (that is frequent in Mediterranean populations), but not by the prototype HLA-B*27 subtype B*27:05. Indeed, the epitope is very dominant in HLA-B*27:02+ patients and is associated with viral escape mutations at the anchor position for HLA-binding in 12 out of 13 HLA-B*27:02+ chronically infected patients.

conclusionsThe NS5B2820 epitope is immunodominant in the context of HLA-B*27:02, but is not restricted by other HLA-B*27 subtypes. This finding suggests an important role of HLA subtypes in the restriction of HCV-specific CD8+ responses. With minor HLA subtypes covering up to 39% of specific populations, these findings may have important implications for the selection of epitopes for global vaccines.

Indexed as

CD8-Positive T-LymphocytesEpitopes, T-LymphocyteHepacivirusHLA-B27 AntigenHumansRNA-Dependent RNA PolymeraseViral Nonstructural ProteinsEpitopes, T-LymphocyteHLA-B27 AntigenNS-5 protein, hepatitis C virusRNA-Dependent RNA PolymeraseViral Nonstructural ProteinsB-LCLB-lymphoblastoid cell linesCD8+ T cell responseEBVEpstein Barr virusHCVhepatitis C virusHepatitis C virusHLAHLA-B(⁎)27HLA-B27HLA subtypeshuman leukocyte antigenIFN-γinterferon-gammanon-structural protein 5BNS5BPBMCperipheral blood mononuclear cellVaccine design

Identifiers

PMID23978718
PMCPMC3867523

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.