Evidence map›Paper›PMID 23978130›Full record

ArticleACS chemical biology2013

Crystallographic fragment screening and structure-based optimization yields a new class of influenza endonuclease inhibitors.

Joseph D Bauman, Disha Patel, Steven F Baker, R S K Vijayan, Amy Xiang, Ajit K Parhi, Luis Martínez-Sobrido, Edmond J LaVoie, Kalyan Das, Eddy Arnold

Open access · greenAbstract read
In one paragraph

Article in ACS chemical biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
7.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 84 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Pharmacophores of Influenza Virus PA Endonuclease Inhibitors.Advances in experimental medicine and biology · 2026
    Review
  5. Review
  6. Article
  7. Review
  8. Article
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  11. Review
  12. Article
  13. Photorelease of a metal-binding pharmacophore from a Ru(II) polypyridine complex.Dalton transactions (Cambridge, England : 2003) · 2021
    Article
  14. Article
  15. Article
  16. Journal of structural biology: X · 2020
    Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 3 countries.

Joseph D BaumanCenter for Advanced Biotechnology and Medicine, ‡Department of Chemistry and Chemical Biology, §Department of Medicinal Chemistry, Rutgers University , Piscataway, New Jersey 08854, United States.
Disha Patel
Steven F Baker
R S K Vijayan
Amy Xiang
Ajit K Parhi
Luis Martínez-Sobrido
Edmond J LaVoie
Kalyan Das
Eddy Arnold
Advanced Pharma · USUniversity of Rochester · USRutgers, The State University of New Jersey · US

Funding

ZINC FINGER-DNA COMPLEXP41RR001646 · NCRR · CORNELL UNIVERSITY ITHACA · PI CINGOLANI, GINO · 1985 to 2011
$23.8M
The T32 Predoctoral Training Program in Immunology (PTPI)T32AI007285 · NIAID · UNIVERSITY OF ROCHESTER · PI Scott Andrew Gerber, JACQUES Robert · 1986 to 2026
$7.6M
Anti-interferon Activity of the Arenavirus NucleoproteinR01AI077719 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI DE LA TORRE, JUAN C., MARTINEZ-SOBRIDO, LUIS · 2009 to 2012
$1.6M
Identification of compounds that activate interferon to treat viral infectionsR21NS075611 · NINDS · UNIVERSITY OF ROCHESTER · PI MARTINEZ-SOBRIDO, LUIS · 2011 to 2011
$155k
Single-cycle Infectious Candid#1 to Study Hemorrhagic Fever New World ArenavirusR03AI099681 · NIAID · UNIVERSITY OF ROCHESTER · PI MARTINEZ-SOBRIDO, LUIS · 2012 to 2013
$154k
NCRR NIH HHS P41 RR001646NCRR NIH HHS RR-01646NIAID NIH HHS HHSN266200700008CNIAID NIH HHS HHSN272201000055CNIAID NIH HHS R01 AI077719NIAID NIH HHS R03 AI099681NIAID NIH HHS R03AI099681-01ANIAID NIH HHS T32 AI007285NIGMS NIH HHS DMR-0225180NINDS NIH HHS R21 NS075611NINDS NIH HHS R21NS075611-01
6 · The paper itself

Abstract

Seasonal and pandemic influenza viruses continue to be a leading global health concern. Emerging resistance to the current drugs and the variable efficacy of vaccines underscore the need for developing new flu drugs that will be broadly effective against wild-type and drug-resistant influenza strains. Here, we report the discovery and development of a class of inhibitors targeting the cap-snatching endonuclease activity of the viral polymerase. A high-resolution crystal form of pandemic 2009 H1N1 influenza polymerase acidic protein N-terminal endonuclease domain (PAN) was engineered and used for fragment screening leading to the identification of new chemical scaffolds binding to the PAN active site cleft. During the course of screening, binding of a third metal ion that is potentially relevant to endonuclease activity was detected in the active site cleft of PAN in the presence of a fragment. Using structure-based optimization, we developed a highly potent hydroxypyridinone series of compounds from a fragment hit that defines a new mode of chelation to the active site metal ions. A compound from the series demonstrating promising enzymatic inhibition in a fluorescence-based enzyme assay with an IC50 value of 11 nM was found to have an antiviral activity (EC50) of 11 μM against PR8 H1N1 influenza A in MDCK cells.

Indexed as

Antiviral AgentsBiological AssayCatalytic DomainCells, CulturedChelating AgentsCrystallography, X-RayDrug Evaluation, PreclinicalEndonucleasesEnzyme InhibitorsHumansInhibitory Concentration 50OrthomyxoviridaeAntiviral AgentsChelating AgentsEndonucleasesEnzyme Inhibitors

Identifiers

PMID23978130
PMCPMC3928712
OpenAlexW1976295658

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.