Evidence map›Paper›PMID 23977246›Full record

ArticlePloS one2013

Phase variation leads to the misidentification of a Neisseria gonorrhoeae virulence gene.

Mark T Anderson, H Steven Seifert

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Biochemical Atypia in RussianMicroorganisms · 2022
    Article
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  7. Regulation ofFEBS open bio · 2017
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  8. The Hfq regulon ofFEBS open bio · 2017
    Article
  9. Article
  10. mSystems
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Mark T AndersonDepartment of Microbiology-Immunology, Northwestern University, Feinberg School of Medicine, Chicago, Illinois, United States of America.
H Steven Seifert
Northwestern University · US

Funding

Mechanisms of Gonococcal Pilin Antigenic/Phase VariationR37AI033493 · NIAID · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Hank S. SEIFERT · 2003 to 2026
$10.1M
Molecular Genetics of the GonococcusR01AI044239 · NIAID · NORTHWESTERN UNIVERSITY AT CHICAGO · PI SEIFERT, HANK S. · 1999 to 2014
$4.0M
MECHANISMS OF GONOCOCCAL PILIN ANTIGENIC/PHASE VARIATIONR01AI033493 · NIAID · NORTHWESTERN UNIVERSITY · PI SEIFERT, H. STEVEN · 1994 to 2002
$855k
The function of NGO2115 in the Neisseria gonorrhoeae oxidative stress resistanceF32AI080083 · NIAID · NORTHWESTERN UNIVERSITY AT CHICAGO · PI ANDERSON, MARK T. · 2010 to 2011
$104k
NIAID NIH HHS F32 AI080083NIAID NIH HHS NIH NSRA AI080083NIAID NIH HHS R01 AI044239NIAID NIH HHS R37 AI033493
6 · The paper itself

Abstract

Neisseria gonorrhoeae is the causative agent of gonorrhea and an obligate pathogen of humans. The Opa proteins of these bacteria are known to mediate attachment and internalization by host cells, including neutrophils. The Opa protein repertoire of a typical N. gonorrhoeae isolate is encoded on ~11 genes distributed throughout the chromosome and is subject to stochastic changes in expression through phase variation. Together, these characteristics make Opa proteins a critical yet unpredictable aspect of any experimental investigation into the interaction of N. gonorrhoeae with host cells. The goal of this study was to identify novel virulence factors of N. gonorrhoeae by assessing the contribution of a set of uncharacterized hydrogen peroxide-induced genes to bacterial survival against neutrophil-mediated killing. To this end, a strain harboring an engineered mutation in the NGO0322 gene was identified that exhibited increased sensitivity to neutrophil-mediated killing, enhanced internalization by neutrophils, and the ability to induce high levels of neutrophil-generated reactive oxygen species. Each of these phenotypes reverted to near wild-type levels following genetic complementation of the NGO0322 mutation. However, after immunoblot analysis of Opa proteins expressed by the isogenic parent, mutant, and genetically complemented strains, it was determined that phase variation had resulted in a disparity between the Opa profiles of these strains. To determine whether Opa phase variation, rather than NGO0322 mutation, was the cause of the observed neutrophil-related phenotypes, NGO0322 function was investigated in N. gonorrhoeae strains lacking all Opa proteins or constitutively expressing the OpaD variant. In both cases, mutation of NGO0322 did not alter survival of gonococci in the presence of neutrophils. These results demonstrate the importance of controlling for the frequent and random variation in Opa protein production by N. gonorrhoeae when investigating host cell interactions.

Indexed as

Gene Expression Regulation, BacterialBacterial Outer Membrane ProteinsBacterial ProteinsGenetic Complementation TestHost-Pathogen InteractionsHumansHydrogen PeroxideMicrobial ViabilityNeisseria gonorrhoeaeNeutrophilsOxidative StressPrimary Cell CultureProtein IsoformsReactive Oxygen SpeciesVirulenceBacterial Outer Membrane ProteinsBacterial ProteinsHydrogen PeroxideOpa protein, NeisseriaProtein IsoformsReactive Oxygen Species

Identifiers

PMID23977246
PMCPMC3745409
OpenAlexW2053941310

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.