Evidence map›Paper›PMID 23977203›Full record

ArticlePloS one2013

Unique kinase catalytic mechanism of AceK with a single magnesium ion.

Quanjie Li, Jimin Zheng, Hongwei Tan, Xichen Li, Guangju Chen, Zongchao Jia

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.6field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Quanjie LiCollege of Chemistry, Beijing Normal University, Beijing, People's Republic of China.
Jimin Zheng
Hongwei Tan
Xichen Li
Guangju Chen
Zongchao Jia
Beijing Normal University · CNQueen's University · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Isocitrate dehydrogenase kinase/phosphatase (AceK) is the founding member of the protein phosphorylation system in prokaryotes. Based on the novel and unique structural characteristics of AceK recently uncovered, we sought to understand its kinase reaction mechanism, along with other features involved in the phosphotransfer process. Herein we report density functional theory QM calculations of the mechanism of the phosphotransfer reaction catalysed by AceK. The transition states located by the QM calculations indicate that the phosphorylation reaction, catalysed by AceK, follows a dissociative mechanism with Asp457 serving as the catalytic base to accept the proton delivered by the substrate. Our results also revealed that AceK prefers a single Mg(2+)-containing active site in the phosphotransfer reaction. The catalytic roles of conserved residues in the active site are discussed.

Indexed as

Computer SimulationModels, MolecularAdenosine TriphosphateBiocatalysisCatalytic DomainCoordination ComplexesEscherichia coliEscherichia coli ProteinsHydrogen BondingIsocitrate DehydrogenaseMagnesiumModels, ChemicalMultienzyme ComplexesProtein BindingQuantum TheoryThermodynamicsAceK protein, E coliAdenosine TriphosphateCoordination ComplexesEscherichia coli ProteinsIsocitrate DehydrogenaseMagnesiumMultienzyme Complexes

Identifiers

PMID23977203
PMCPMC3747045
OpenAlexW2006904228

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.