ArticlePloS one2013
Postgwas: advanced GWAS interpretation in R.
Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
13 citing papers in PubMed.
- Effect of Fatty Acids on Backfat Quality in Beijing Black Pigs.Foods (Basel, Switzerland) · 2024Article
- The Progression in Developing Genomic Resources for Crop Improvement.Life (Basel, Switzerland) · 2023Review
- Role of germline variants in the metastasis of breast carcinomas.Oncotarget · 2022Article
- Discovering of Genomic Variations Associated to Growth Traits by GWAS in Braunvieh Cattle.Genes · 2021Article
- ADAMTS12, a new candidate gene for pediatric stroke.PloS one · 2020Article
- Genetic Contribution to Variation in Blood Calcium, Phosphorus, and Alkaline Phosphatase Activity in Pigs.Frontiers in genetics · 2019Article
- Targeted resequencing of a locus for heparin-induced thrombocytopenia on chromosome 5 identified in a genome-wide association study.Journal of molecular medicine (Berlin, Germany) · 2018Article
- Performance of epistasis detection methods in semi-simulated GWAS.BMC bioinformatics · 2018Article
- Association mapping for total polyphenol content, total flavonoid content and antioxidant activity in barley.BMC genomics · 2018Article
- Mergeomics: multidimensional data integration to identify pathogenic perturbations to biological systems.BMC genomics · 2016Article
- A guide to genome-wide association analysis and post-analytic interrogation.Statistics in medicine · 2015Article
- Genome-Wide Association Studies of the Human Gut Microbiota.PloS one · 2015Article
- Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We present a comprehensive toolkit for post-processing, visualization and advanced analysis of GWAS results. In the spirit of comparable tools for gene-expression analysis, we attempt to unify and simplify several procedures that are essential for the interpretation of GWAS results. This includes the generation of advanced Manhattan and regional association plots including rare variant display as well as novel interaction network analysis tools for the investigation of systems-biology aspects. Our package supports virtually all model organisms and represents the first cohesive implementation of such tools for the popular language R. Previous software of that range is dispersed over a wide range of platforms and mostly not adaptable for custom work pipelines. We demonstrate the utility of this package by providing an example workflow on a publicly available dataset.
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.