Evidence map›Paper›PMID 23977002›Full record

ArticlePloS one2013

Genome sequencing and analysis of BCG vaccine strains.

Wen Zhang, Yuanyuan Zhang, Huajun Zheng, Yuanlong Pan, Haican Liu, Pengcheng Du, Li Wan, Jun Liu, Baoli Zhu, Guoping Zhao and 2 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 101 citations in OpenAlex.

  1. Review
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  14. Frontiers in immunology · 2022
    Article
  15. Review
  16. Article
  17. Mice infected withbioRxiv : the preprint server for biology · 2021
    Article
  18. Efficacy of BCG Vaccination Depends on Host Genetics.Bulletin of experimental biology and medicine · 2021
    Article
  19. Pan and Core Genome Analysis of 183Antibiotics (Basel, Switzerland) · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 2 countries.

Wen ZhangNational Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention/State Key Laboratory for Infectious Disease Prevention and Control, Beijing, China ; Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Hangzhou, China.
Yuanyuan Zhang
Huajun Zheng
Yuanlong Pan
Haican Liu
Pengcheng Du
Li Wan
Jun Liu
Baoli Zhu
Guoping Zhao
Chen Chen
Kanglin Wan
National Institute for Communicable Disease Control and Prevention · CNInstitute of Microbiology · CNState Key Laboratory of Infectious Disease Prevention and ControlChinese National Human Genome Center at Shanghai · CNShanghai Institutes for Biological Sciences · CNUniversity of Toronto · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAlthough the Bacillus Calmette-Guérin (BCG) vaccine against tuberculosis (TB) has been available for more than 75 years, one third of the world's population is still infected with Mycobacterium tuberculosis and approximately 2 million people die of TB every year. To reduce this immense TB burden, a clearer understanding of the functional genes underlying the action of BCG and the development of new vaccines are urgently needed. METHODS AND

findingsComparative genomic analysis of 19 M. tuberculosis complex strains showed that BCG strains underwent repeated human manipulation, had higher region of deletion rates than those of natural M. tuberculosis strains, and lost several essential components such as T-cell epitopes. A total of 188 BCG strain T-cell epitopes were lost to various degrees. The non-virulent BCG Tokyo strain, which has the largest number of T-cell epitopes (359), lost 124. Here we propose that BCG strain protection variability results from different epitopes. This study is the first to present BCG as a model organism for genetics research. BCG strains have a very well-documented history and now detailed genome information. Genome comparison revealed the selection process of BCG strains under human manipulation (1908-1966).

conclusionsOur results revealed the cause of BCG vaccine strain protection variability at the genome level and supported the hypothesis that the restoration of lost BCG Tokyo epitopes is a useful future vaccine development strategy. Furthermore, these detailed BCG vaccine genome investigation results will be useful in microbial genetics, microbial engineering and other research fields.

Indexed as

Amino Acid SequenceGenome, BacterialSequence DeletionAntigenic VariationBCG VaccineEpitopes, T-LymphocyteHumansMolecular Sequence DataMycobacterium tuberculosisPhylogenySequence Analysis, DNATuberculosis, PulmonaryBCG VaccineEpitopes, T-Lymphocyte

Identifiers

PMID23977002
PMCPMC3747166
OpenAlexW2103230271

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.