ArticlePlant molecular biology2014
Coexpression network analysis associated with call of rice seedlings for encountering heat stress.
Article in Plant molecular biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.
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Who cites it
42 citing papers in PubMed, 84 citations in OpenAlex.
- Decoding core molecular mechanisms of heat-stress tolerance in Brassica napus using transcriptomics and machine learning.Plant cell reports · 2026Article
- Protein networks: integrating pathways for plant heat stress adaptation.Functional & integrative genomics · 2025Review
- Genome-wide identification of VOZ gene family in ten cotton species and the function analysis of GhVOZ2 involved in heat stress response.BMC genomics · 2025Article
- ABA-GA antagonism and modular gene networks cooperatively drive acquisition of desiccation tolerance in perilla seeds.Frontiers in plant science · 2025Article
- Transcriptome-wide expression landscape and starch synthesis pathway co-expression network in sorghum.The plant genome · 2024Article
- Characterization and in silico analysis of the domain unknown function DUF568-containing gene family in rice (Oryza sativa L.).BMC genomics · 2023Article
- Genome-wide association study of soybean (Frontiers in plant science · 2023Article
- Mapping responsive genomic elements to heat stress in a maize diversity panel.Genome biology · 2022Article
- Genome-Wide Identification and Characterization of Heat Shock Protein 20 Genes in Maize.Life (Basel, Switzerland) · 2022Article
- Comparative Analysis of Heat-Tolerant and Heat-Susceptible Rice Highlights the Role ofPlants (Basel, Switzerland) · 2022Article
- Global identification and integrated analysis of heat-responsive long non-coding RNAs in contrasting rice cultivars.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- Development ofFrontiers in genetics · 2022Article
- Identification of quantitative trait nucleotides and candidate genes for soybean seed weight by multiple models of genome-wide association study.BMC plant biology · 2020Article
- Molecular and genetic bases of heat stress responses in crop plants and breeding for increased resilience and productivity.Journal of experimental botany · 2020Review
- Dynamic Transcriptome Analysis of Anther Response to Heat Stress during Anthesis in Thermotolerant Rice (International journal of molecular sciences · 2020Article
- Identification of Ear Morphology Genes in Maize (Frontiers in genetics · 2020Article
- Article
- Silencing of class I small heat shock proteins affects seed-related attributes and thermotolerance in rice seedlings.Planta · 2019Article
- Universal stress protein in Malus sieversii confers enhanced drought tolerance.Journal of plant research · 2019Article
- Metabolic responses of rice source and sink organs during recovery from combined drought and heat stress in the field.GigaScience · 2019Article
Corrections and comments
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Authors and funding
3 authors at 2 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Coexpression network analysis is useful tool for identification of functional association of coexpressed genes. We developed a coexpression network of rice from heat stress transcriptome data. Global transcriptome of rice leaf tissues was performed by microarray at three time points--post 10 and 60 min heat stress at 42 °C and 30 min recovery at 26 °C following 60 min 42 °C heat stress to investigate specifically the early events in the heat stress and recovery response. The transcriptome profile was significantly modulated within 10 min of heat stress. Strikingly, the number of up-regulated genes was higher than the number of down-regulated genes in 10 min of heat stress. The enrichment of GO terms protein kinase activity/protein serine threonine kinase activity, response to heat and reactive oxygen species in up-regulated genes after 10 min signifies the role of signal transduction events and reactive oxygen species during early heat stress. The enrichment of transcription factor (TF) binding sites for heat shock factors, bZIPs and DREBs coupled with up-regulation of TFs of different families suggests that the heat stress response in rice involves integration of various regulatory networks. The interpretation of microarray data in the context of coexpression network analysis identified several functionally correlated genes consisting of previously documented heat upregulated genes as well as new genes that can be implicated in heat stress. Based on the findings on parallel analysis of growth of seedlings, associated changes in transcripts of selected Hsps, genome-wide microarray profiling and the coexpression network analysis, this study is a step forward in understanding heat response of rice, the world's most important food crop.
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