Evidence map›Paper›PMID 23974796›Full record

ArticleThe EMBO journal2013

Identification of a long non-coding RNA-associated RNP complex regulating metastasis at the translational step.

Kiranmai Gumireddy, Anping Li, Jinchun Yan, Tetsuro Setoyama, Gregg J Johannes, Ulf A Orom, Julia Tchou, Qin Liu, Lin Zhang, David W Speicher and 2 more

Abstract read
In one paragraph

Article in The EMBO journal, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 99 papers.

0numbers the graph read from it
0cells of the map it votes in
99citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

99 citing papers in PubMed, 161 citations in OpenAlex.

  1. Article
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  11. The Role of mInternational journal of molecular sciences · 2023
    Review
  12. Article
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  14. CaCell death & disease · 2022
    Article
  15. Review
  16. Review
  17. Genomic and functional conservation of lncRNAs: lessons from flies.Mammalian genome : official journal of the International Mammalian Genome Society · 2022
    Review
  18. Review
  19. Towards an IdealInternational journal of molecular sciences · 2022
    Review
  20. ALKBH5-mediated NCell death discovery · 2022
    Article

39 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 2 countries.

Kiranmai GumireddyThe Wistar Institute, Philadelphia, PA, USA.
Anping Li
Jinchun Yan
Tetsuro Setoyama
Gregg J Johannes
Ulf A Orom
Julia Tchou
Qin Liu
Lin Zhang
David W Speicher
George A Calin
Qihong Huang
The Wistar Institute · USThe University of Texas MD Anderson Cancer Center · USUniversity of Pennsylvania · USDrexel University · USMax Planck Institute for Molecular Genetics · DEUniversity of Washington Medical Center · US

Funding

Defining the Molecular Mechanisms of KLF17 Regulation and Function in EMTR01CA148759 · NCI · WISTAR INSTITUTE · PI HUANG, QIHONG · 2010 to 2014
$1.7M
NCI NIH HHS R01 CA148759NCI NIH HHS R01CA148759-01
6 · The paper itself

Abstract

Long non-coding RNAs (lncRNAs) are a novel class of regulatory genes that play critical roles in various processes ranging from normal development to human diseases such as cancer progression. Recent studies have shown that lncRNAs regulate the gene expression by chromatin remodelling, transcription, splicing and RNA decay control, enhancer function, and epigenetic regulation. However, little is known about translation regulation by lncRNAs. We identified a translational regulatory lncRNA (treRNA) through genome-wide computational analysis. We found that treRNA is upregulated in paired clinical breast cancer primary and lymph-node metastasis samples, and that its expression stimulates tumour invasion in vitro and metastasis in vivo. Interestingly, we found that treRNA downregulates the expression of the epithelial marker E-cadherin by suppressing the translation of its mRNA. We identified a novel ribonucleoprotein (RNP) complex, consisting of RNA-binding proteins (hnRNP K, FXR1, and FXR2), PUF60 and SF3B3, that is required for this treRNA functions. Translational suppression by treRNA is dependent on the 3'UTR of the E-cadherin mRNA. Taken together, our study indicates a novel mechanism of gene regulation by lncRNAs in cancer progression.

Indexed as

Gene Expression Regulation, NeoplasticAnimalsFemaleHEK293 CellsHumansMiceMice, Inbred NODMice, SCIDMultiprotein ComplexesNeoplasm MetastasisProtein BindingProtein BiosynthesisRibonucleoproteinsRNA, Long NoncodingTumor Cells, CulturedMultiprotein ComplexesRibonucleoproteinsRNA, Long Noncoding

Identifiers

PMID23974796
PMCPMC3801433
OpenAlexW2160671118

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.