Evidence map›Paper›PMID 23974112›Full record

ArticleCell cycle (Georgetown, Tex.)2013

SEACing the GAP that nEGOCiates TORC1 activation: evolutionary conservation of Rag GTPase regulation.

Nicolas Panchaud, Marie-Pierre Péli-Gulli, Claudio De Virgilio

Open access · hybridAbstract read
In one paragraph

Article in Cell cycle (Georgetown, Tex.), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed, 1 pooled it
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 1 synthesis or guideline pooled it, 113 citations in OpenAlex.

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  18. Diphthamide promotes TOR signaling by increasing the translation of proteins in the TORC1 pathway.Proceedings of the National Academy of Sciences of the United States of America · 2021
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6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Nicolas PanchaudDepartment of Biology; Division of Biochemistry; University of Fribourg; Fribourg, Switzerland.
Marie-Pierre Péli-Gulli
Claudio De Virgilio
University of Fribourg · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The target of rapamycin complex 1 (TORC1) regulates eukaryotic cell growth in response to a variety of input signals. In S. cerevisiae, amino acids activate TORC1 through the Rag guanosine triphosphatase (GTPase) heterodimer composed of Gtr1 and Gtr2 found together with Ego1 and Ego3 in the EGO complex (EGOC). The GTPase activity of Gtr1 is regulated by the SEA complex (SEAC). Specifically, SEACIT, a SEAC subcomplex containing Iml1, Npr2, and Npr3 functions as a GTPase activator (GAP) for Gtr1 to decrease the activity of TORC1 and, consequently, growth, after amino acid deprivation. Here, we present genetic epistasis data, which show that SEACAT, the other SEAC subcomplex, containing Seh1, Sea2-4, and Sec13, antagonizes the GAP function of SEACIT. Orthologs of EGOC (Ragulator), SEACIT (GATOR1), and SEACAT (GATOR2) are present in higher eukaryotes, highlighting the remarkable conservation, from yeast to man, of Rag GTPase and TORC1 regulation.

Indexed as

AnimalsGTP PhosphohydrolasesHumansIntracellular Signaling Peptides and ProteinsMechanistic Target of Rapamycin Complex 1Monomeric GTP-Binding ProteinsMultiprotein ComplexesNuclear Pore Complex ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTOR Serine-Threonine KinasesGTP PhosphohydrolasesGtr1 protein, S cerevisiaeGTR2 protein, S cerevisiaeIml1 protein, S cerevisiaeIntracellular Signaling Peptides and ProteinsMechanistic Target of Rapamycin Complex 1MEH1 protein, S cerevisiaeMonomeric GTP-Binding ProteinsMultiprotein ComplexesNPR2 protein, S cerevisiaeNPR3 protein, S cerevisiaeNuclear Pore Complex ProteinsSaccharomyces cerevisiae ProteinsSEC13 protein, S cerevisiaeSeh1 protein, S cerevisiaeTOR Serine-Threonine Kinasesamino acid signalingEGO complexGATOR1GATOR2Iml1-Npr2-Npr3 Rag GTPase GAP complexRag GTPasesSEA complexSec13Seh1TOR complex 1

Identifiers

PMID23974112
PMCPMC3875668
OpenAlexW2052501713

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.