Evidence map›Paper›PMID 23974109›Full record

ArticleCell cycle (Georgetown, Tex.)2013

Unbiased transcriptome signature of in vivo cell proliferation reveals pro- and antiproliferative gene networks.

Meital Cohen, Manuela Vecsler, Arthur Liberzon, Meirav Noach, Eitan Zlotorynski, Amit Tzur

Open access · hybridAbstract read
In one paragraph

Article in Cell cycle (Georgetown, Tex.), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 24 citations in OpenAlex.

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  18. Integrated Microfluidics for Protein Modification Discovery.Molecular & cellular proteomics : MCP · 2015
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 3 countries.

Meital CohenThe Mina and Everard Goodman Faculty of Life Sciences; Bar-Ilan University; Ramat-Gan, Israel; Advanced Materials and Nanotechnology Institute; Bar-Ilan University; Ramat-Gan, Israel.
Manuela Vecsler
Arthur Liberzon
Meirav Noach
Eitan Zlotorynski
Amit Tzur
Bar-Ilan University · ILBroad Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Different types of mature B-cell lymphocytes are overall highly similar. Nevertheless, some B cells proliferate intensively, while others rarely do. Here, we demonstrate that a simple binary classification of gene expression in proliferating vs. resting B cells can identify, with remarkable selectivity, global in vivo regulators of the mammalian cell cycle, many of which are also post-translationally regulated by the APC/C E3 ligase. Consequently, we discover a novel regulatory network between the APC/C and the E2F transcription factors and discuss its potential impact on the G1-S transition of the cell cycle. In addition, by focusing on genes whose expression inversely correlates with proliferation, we demonstrate the inherent ability of our approach to also identify in vivo regulators of cell differentiation, cell survival, and other antiproliferative processes. Relying on data sets of wt, non-transgenic animals, our approach can be applied to other cell lineages and human data sets.

Indexed as

Gene Regulatory NetworksTranscriptomeAdenomatous Polyposis Coli ProteinB-LymphocytesCell DifferentiationCell LineageCell ProliferationE2F1 Transcription FactorE2F Transcription FactorsG1 PhaseHEK293 CellsHeLa CellsHumansS PhaseUbiquitin-Protein Ligase ComplexesUbiquitin-Protein LigasesAdenomatous Polyposis Coli ProteinAPC protein, humanE2F1 Transcription FactorE2F Transcription FactorsUbiquitin-Protein Ligase ComplexesUbiquitin-Protein LigasesAPCAPC/Catypical E2FsCdh1cell cycledifferentiationE2F1E2F7E2F8proliferationsurvivaltranscriptomeUbiquitin

Identifiers

PMID23974109
PMCPMC3875674
OpenAlexW2064281414

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.