Evidence map›Paper›PMID 23973313›Full record

ArticleNeuropharmacology2013

Structure-based discovery of antagonists for GluN3-containing N-methyl-D-aspartate receptors.

Trine Kvist, Jeremy R Greenwood, Kasper B Hansen, Stephen F Traynelis, Hans Bräuner-Osborne

Open access · greenAbstract read
In one paragraph

Article in Neuropharmacology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
0.6field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 53 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. The GluN3-containing NMDA receptors.Channels (Austin, Tex.) · 2025
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Distinct Regulation of Early Trafficking of the NMDA Receptors by the Ligand-Binding Domains of the GluN1 and GluN2A Subunits.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2025
    Article
  13. Plasticity in the Functional Properties of NMDA Receptors Improves Network Stability during Severe Energy Stress.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2024
    Article
  14. Structural prediction of GluN3 NMDA receptors.Frontiers in physiology · 2024
    Article
  15. Selective Cell-Surface Expression of Triheteromeric NMDA Receptors.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Derivatives of (Journal of medicinal chemistry · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Trine KvistDept. of Drug Design and Pharmacology, Faculty of Health and Medical Sciences, University of Copenhagen, Fruebjergvej 3, DK-2100 Copenhagen, Denmark.
Jeremy R GreenwoodSchrödinger, Inc., 120 West 45th St., New York, NY 10036, USA.
Kasper B HansenDept. of Pharmacology, Emory University School of Medicine, 5062 Rollins Research Center, 1510 Clifton Road, Atlanta, GA 30322, USA.
Stephen F TraynelisDept. of Pharmacology, Emory University School of Medicine, 5062 Rollins Research Center, 1510 Clifton Road, Atlanta, GA 30322, USA.
Hans Bräuner-OsborneDept. of Drug Design and Pharmacology, Faculty of Health and Medical Sciences, University of Copenhagen, Fruebjergvej 3, DK-2100 Copenhagen, Denmark. Electronic address: hbo@sund.ku.dk.
Emory University · USUniversity of Copenhagen · DKSchrodinger (United States) · US

Funding

Control of Glutamate Receptor FunctionR01NS036654 · NINDS · EMORY UNIVERSITY · PI TRAYNELIS, STEPHEN F · 1998 to 2018
$3.7M
Mechanism of Action of Novel Subunit-Selective NMDA Receptor ModulatorsR01NS065371 · NINDS · EMORY UNIVERSITY · PI TRAYNELIS, STEPHEN F · 2009 to 2018
$3.4M
NINDS NIH HHS NS065371NINDS NIH HHS R01 NS036654NINDS NIH HHS R01 NS065371PHS HHS N036654
6 · The paper itself

Abstract

NMDA receptors are ligand-gated ion channels that assemble into tetrameric receptor complexes composed of glycine-binding GluN1 and GluN3 subunits (GluN3A-B) and glutamate-binding GluN2 subunits (GluN2A-D). NMDA receptors can assemble as GluN1/N2 receptors and as GluN3-containing NMDA receptors, which are either glutamate/glycine-activated triheteromeric GluN1/N2/N3 receptors or glycine-activated diheteromeric GluN1/N3 receptors. The glycine-binding GluN1 and GluN3 subunits display strikingly different pharmacological selectivity profiles. However, the pharmacological characterization of GluN3-containing receptors has been hampered by the lack of methods and pharmacological tools to study GluN3 subunit pharmacology in isolation. Here, we have developed a method to study the pharmacology of GluN3 subunits in recombinant diheteromeric GluN1/N3 receptors by mutating the orthosteric ligand-binding pocket in GluN1. This method is suitable for performing compound screening and characterization of structure-activity relationship studies on GluN3 ligands. We have performed a virtual screen of the orthosteric binding site of GluN3A in the search for antagonists with selectivity for GluN3 subunits. In the subsequent pharmacological evaluation of 99 selected compounds, we identified 6-hydroxy-[1,2,5]oxadiazolo[3,4-b]pyrazin-5(4H)-one (TK80) a novel competitive antagonist with preference for the GluN3B subunit. Serendipitously, we also identified [2-hydroxy-5-((4-(pyridin-3-yl)thiazol-2-yl)amino]benzoic acid (TK13) and 4-(2,4-dichlorobenzoyl)-1H-pyrrole-2-carboxylic acid (TK30), two novel non-competitive GluN3 antagonists. These findings demonstrate that structural differences between the orthosteric binding site of GluN3 and GluN1 can be exploited to generate selective ligands.

Indexed as

AnimalsBinding SitesComputer SimulationDose-Response Relationship, DrugDrug Evaluation, PreclinicalExcitatory Amino Acid AntagonistsGlycineInhibitory Concentration 50Membrane PotentialsModels, MolecularOocytesProtein BindingProtein Structure, TertiaryProtein SubunitsReceptors, N-Methyl-D-AspartateSmall Molecule LibrariesExcitatory Amino Acid AntagonistsGluN3A protein, mouseGlycineProtein SubunitsReceptors, N-Methyl-D-AspartateSmall Molecule Libraries[2-hydroxy-5-((4-(pyridin-3-yl)thiazol-2-yl)amino]benzoic acid4-(2,4-dichlorobenzoyl)-1H-pyrrole-2-carboxylic acid6-cyano-7-nitroquinoxaline-2,3-dione6-hydroxy-[1,2,5]oxadiazolo[3,4-b]pyrazin-5(4H)-oneAMPAAntagonistCNQXDCKAdichlorokynurenic acidGluN3 subunitiGluRionotropic glutamate receptorLBDligand-binding domainNMDANMDA receptorN-methyl-d-aspartateSelectivityTEVCTK13TK30TK80two-electrode voltage-clampVirtual screeningXenopus oocyte electrophysiologyα-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid

Identifiers

PMID23973313
PMCPMC3865070
OpenAlexW2149492210

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.