Evidence map›Paper›PMID 23972471›Full record

ArticleStructure (London, England : 1993)2013

Conformational analysis of NMDA receptor GluN1, GluN2, and GluN3 ligand-binding domains reveals subtype-specific characteristics.

Yongneng Yao, John Belcher, Anthony J Berger, Mark L Mayer, Albert Y Lau

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed, 97 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. The GluN3-containing NMDA receptors.Channels (Austin, Tex.) · 2025
    Review
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Structural insights into NMDA receptor pharmacology.Biochemical Society transactions · 2023
    Review
  11. Article
  12. Article
  13. Review
  14. The roles of GluN3-containing N-methyl-D-aspartate receptor in central nerve system.Zhejiang da xue xue bao. Yi xue ban = Journal of Zhejiang University. Medical sciences · 2021
    Review
  15. Review
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Yongneng YaoLaboratory of Cellular and Molecular Neurophysiology, Porter Neuroscience Research Center, National Institute of Child Health and Human Development, Department of Health and Human Services, National Institutes of Health, Bethesda, MD 20892, USA.
John Belcher
Anthony J Berger
Mark L Mayer
Albert Y Lau
National Institutes of Health · USJohns Hopkins University · US

Funding

Structure And Function Of Neurotransmitter Receptor Ion ChannelsZIAHD000707 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI MAYER, MARK L · 2009 to 2015
$9.5M
Structural dynamics and function of the glutamate receptor ligand-binding domainR01GM094495 · NIGMS · UNIVERSITY OF CHICAGO · PI LAU, ALBERT Y · 2010 to 2013
$1.0M
Intramural NIH HHSNIGMS NIH HHS GM094495NIGMS NIH HHS R01 GM094495
6 · The paper itself

Abstract

The NMDA receptor family of glutamate receptor ion channels is formed by obligate heteromeric assemblies of GluN1, GluN2, and GluN3 subunits. GluN1 and GluN3 bind glycine, whereas GluN2 binds glutamate. Crystal structures of the GluN1 and GluN3A ligand-binding domains (LBDs) in their apo states unexpectedly reveal open- and closed-cleft conformations, respectively, with water molecules filling the binding pockets. Computed conformational free energy landscapes for GluN1, GluN2A, and GluN3A LBDs reveal that the apo-state LBDs sample closed-cleft conformations, suggesting that their agonists bind via a conformational selection mechanism. By contrast, free energy landscapes for the AMPA receptor GluA2 LBD suggest binding of glutamate via an induced-fit mechanism. Principal component analysis reveals a rich spectrum of hinge bending, rocking, twisting, and sweeping motions that are different for the GluN1, GluN2A, GluN3A, and GluA2 LBDs. This variation highlights the structural complexity of signaling by glutamate receptor ion channels.

Indexed as

AnimalsApoproteinsBinding SitesCrystallography, X-RayHydrogen BondingLigandsMembrane GlycoproteinsModels, MolecularPrincipal Component AnalysisProtein Structure, SecondaryProtein Structure, TertiaryRatsReceptors, N-Methyl-D-AspartateThermodynamicsApoproteinsGrin3a protein, ratLigandsMembrane GlycoproteinsReceptors, N-Methyl-D-Aspartate

Identifiers

PMID23972471
PMCPMC3814224
OpenAlexW1999644112

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.