Evidence map›Paper›PMID 23971905›Full record

ArticleNucleic acid therapeutics2013

Selection and characterization of single stranded DNA aptamers for the hormone abscisic Acid.

Alessia Grozio, Victor M Gonzalez, Enrico Millo, Laura Sturla, Tiziana Vigliarolo, Luca Bagnasco, Lucrezia Guida, Cristina D'Arrigo, Antonio De Flora, Annalisa Salis and 3 more

Abstract read
In one paragraph

Article in Nucleic acid therapeutics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Review
  6. Article
  7. Review
  8. Review
  9. Abscisic acid transport in human erythrocytes.The Journal of biological chemistry · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Alessia GrozioDepartment of Experimental Medicine, Section of Biochemistry, University of Genova, Italy.
Victor M Gonzalez
Enrico Millo
Laura Sturla
Tiziana Vigliarolo
Luca Bagnasco
Lucrezia Guida
Cristina D'Arrigo
Antonio De Flora
Annalisa Salis
Elena M Martin
Marta Bellotti
Elena Zocchi
University of Genoa · ITInstituto Cajal · ESInstituto Ramón y Cajal de Investigación Sanitaria · ESNational Research Council · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The hormone abscisic acid (ABA) is a small molecule involved in pivotal physiological functions in higher plants. Recently, ABA has been also identified as an endogenous hormone in mammals, regulating different cell functions including inflammatory processes, stem cell expansion, insulin release, and glucose uptake. Aptamers are short, single-stranded (ss) oligonucleotidesable to recognize target molecules with high affinity. The small size of the ABA molecule represented a challenge for aptamer development and the aim of this study was to develop specific anti-ABA DNA aptamers. Biotinylated abscisic acid (bio-ABA) was immobilized on streptavidin-coated magnetic beads. DNA aptamers against bio-ABA were selected with 7 iterative rounds of the systematic evolution of ligands by exponential enrichment method (SELEX), each round comprising incubation of the ABA-binding beads with the ssDNA sequences, DNA elution, electrophoresis, and polymerase chain reaction (PCR) amplification. The PCR product was cloned and sequenced. The binding affinity of several clones was determined using bio-ABA immobilized on streptavidin-coated plates. Aptamer 2 and aptamer 9 showed the highest binding affinity, with dissociation constants values of 0.98 ± 0.14 μM and 0.80 ± 0.07 μM, respectively. Aptamers 2 and 9 were also able to bind free, unmodified ABA and to discriminate between different ABA enantiomers and isomers. Our findings indicate that ssDNA aptamers can selectively bind ABA and could be used for the development of ABA quantitation assays.

Indexed as

Abscisic AcidAptamers, NucleotideBase SequenceBiotinBiotinylationCells, CulturedCloning, MolecularCyclic AMPDNA, Single-StrandedEscherichia coliGranulocytesHumansKineticsLigandsMagnetsMolecular Sequence DataAbscisic AcidAptamers, NucleotideBiotinCyclic AMPDNA, Single-StrandedLigandsStreptavidin

Identifiers

PMID23971905
PMCPMC3760064
OpenAlexW1979601624

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.