Evidence map›Paper›PMID 23970468›Full record

ArticleInvestigative ophthalmology & visual science2013

Exploration of molecular factors impairing superoxide dismutase isoforms activity in human senile cataractous lenses.

Sankaranarayanan Rajkumar, Abhay R Vasavada, Mamidipudi R Praveen, Rajendran Ananthan, Geereddy B Reddy, Harsha Tripathi, Darshini A Ganatra, Anshul I Arora, Alpesh R Patel

Open access · hybridAbstract read
In one paragraph

Article in Investigative ophthalmology & visual science, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 21 citations in OpenAlex.

  1. Trial
  2. Article
  3. Review
  4. Current Approach to the Pathogenesis of Diabetic Cataracts.International journal of molecular sciences · 2023
    Review
  5. Can Antioxidants Reduce the Toxicity of Bisphenol?Antioxidants (Basel, Switzerland) · 2022
    Review
  6. Article
  7. Review
  8. Review
  9. Review
  10. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Sankaranarayanan RajkumarDepartment of Molecular Genetics and Biochemistry, Iladevi Cataract and IOL Research Centre, Memnagar, Ahmedabad, Gujarat, India.
Abhay R Vasavada
Mamidipudi R Praveen
Rajendran Ananthan
Geereddy B Reddy
Harsha Tripathi
Darshini A Ganatra
Anshul I Arora
Alpesh R Patel
Raghudeep Eye Hospital · INNational Institute of Nutrition · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeTo explore different molecular factors impairing the activities of superoxide dismutase (SOD) isoforms in senile cataractous lenses.

methodsEnzyme activity of SOD isoforms, levels of their corresponding cofactors copper (Cu), manganese (Mn), zinc (Zn), and expression of mRNA transcripts and proteins were determined in the lenses of human subjects with and without cataract. DNA from lens epithelium (LE) and peripheral blood was isolated. Polymerase chain reaction-single strand conformation polymorphism (PCR-SSCP) followed by sequencing was carried out to screen somatic mutations. The impact of intronic insertion/deletion (INDEL) variations on the splicing process and on the resultant transcript was evaluated. Genotyping of IVS4+42delG polymorphism of SOD1 gene was done by PCR-restriction fragment length polymorphism (RFLP).

resultsA significant decrease in Cu/Zn- and Mn-SOD activity (P < 0.001) and in Cu/Zn-SOD transcript (P < 0.001) and its protein (P < 0.05) were found in cataractous lenses. No significant change in the level of copper (P = 0.36) and an increase in the level of manganese (P = 0.01) and zinc (P = 0.02) were observed in cataractous lenses. A significant positive correlation between the level of Cu/Zn-SOD activity and the levels of Cu (P = 0.003) and Zn (P = 0.005) was found in the cataractous lenses. DNA sequencing revealed three intronic INDEL variations in exon4 of SOD1 gene. Splice-junction analysis showed the potential of IVS4+42delG in creating a new cryptic acceptor site. If it is involved in alternate splicing, it could result in generation of SOD1 mRNA transcripts lacking exon4 region. Transcript analysis revealed the presence of complete SOD1 mRNA transcripts. Genotyping revealed the presence of IVS4+42delG polymorphism in all subjects.

conclusionsThe decrease in the activity of SOD1 isoform in cataractous lenses was associated with the decreased level of mRNA transcripts and their protein expression and was not associated with either modulation in the level of enzyme cofactors or with INDEL variations.

Indexed as

AgedBlotting, WesternCataractCoenzymesCopperDNA Mutational AnalysisEpithelium, CornealFemaleGene Expression Regulation, EnzymologicGenotypeHumansINDEL MutationMaleManganeseMiddle AgedPolymorphism, Single NucleotideCoenzymesCopperManganeseProtein IsoformsRNA, MessengerSOD1 protein, humanSuperoxide DismutaseSuperoxide Dismutase-1Zinccofactorssenile cataractsomatic mutationsplice-transcript variantsuperoxide dismutase

Identifiers

PMID23970468
PMCPMC4590653
OpenAlexW2327116398

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.