Evidence map›Paper›PMID 23970118›Full record

ArticleInternational journal of oncology2013

VHL-dependent regulation of a β-dystroglycan glycoform and glycogene expression in renal cancer.

Vassilis Aggelis, Rachel A Craven, Jianhe Peng, Patricia Harnden, Lana Schaffer, Gilberto E Hernandez, Steven R Head, Eamonn R Maher, Robert Tonge, Peter J Selby and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in International journal of oncology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Vassilis AggelisCancer Research UK Centre, Leeds Institute of Cancer and Pathology, St. James's University Hospital, Leeds LS9 7TF, UK.
Rachel A Craven
Jianhe Peng
Patricia Harnden
Lana Schaffer
Gilberto E Hernandez
Steven R Head
Eamonn R Maher
Robert Tonge
Peter J Selby
Rosamonde E Banks
Cancer Research UK · GBScripps Research Institute · USSt James's University Hospital · GBAddenbrooke's Hospital · GBWaters (United Kingdom) · GB

Funding

Cancer Research UK
6 · The paper itself

Abstract

Identification of novel biomarkers and targets in renal cell carcinoma (RCC) remains a priority and one cellular compartment that is a rich potential source of such molecules is the plasma membrane. A shotgun proteomic analysis of cell surface proteins enriched by cell surface biotinylation and avidin affinity chromatography was explored using the UMRC2- renal cancer cell line, which lacks von Hippel-Lindau (VHL) tumour suppressor gene function, to determine whether proteins of interest could be detected. Of the 814 proteins identified ~22% were plasma membrane or membrane-associated, including several with known associations with cancer. This included β-dystroglycan, the transmembrane subunit of the DAG1 gene product. VHL-dependent changes in the form of β-dystroglycan were detected in UMRC2-/+VHL transfectants. Deglycosylation experiments showed that this was due to differential sialylation. Analysis of normal kidney cortex and conventional RCC tissues showed that a similar change also occurred in vivo. Investigation of the expression of genes involved in glycosylation in UMRC2-/+VHL cells using a focussed microarray highlighted a number of enzymes involved in sialylation; upregulation of bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase (GNE) was validated in UMRC2- cells compared with their +VHL counterparts and also found in conventional RCC tissue. These results implicate VHL in the regulation of glycosylation and raise interesting questions regarding the extent and importance of such changes in RCC.

Indexed as

Gene Expression Regulation, NeoplasticBiomarkers, TumorBlotting, WesternCell MembraneChromatography, LiquidDystroglycansGas Chromatography-Mass SpectrometryGene Expression ProfilingGlycoproteinsGlycosylationHumansKidney NeoplasmsOligonucleotide Array Sequence AnalysisTumor Cells, CulturedVon Hippel-Lindau Tumor Suppressor ProteinBiomarkers, TumorDystroglycansGlycoproteinsVHL protein, humanVon Hippel-Lindau Tumor Suppressor Protein

Identifiers

PMID23970118
PMCPMC3823392
OpenAlexW2148611405

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.