Evidence map›Paper›PMID 23969108›Full record

ArticleMolecular immunology2013

Structural and bioinformatic analysis of the kiwifruit allergen Act d 11, a member of the family of ripening-related proteins.

Maksymilian Chruszcz, Maria Antonietta Ciardiello, Tomasz Osinski, Karolina A Majorek, Ivana Giangrieco, Jose Font, Heimo Breiteneder, Konstantinos Thalassinos, Wladek Minor

Abstract read
In one paragraph

Article in Molecular immunology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.8field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 56 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Role of Small Molecule Ligands in IgE-Mediated Allergy.Current allergy and asthma reports · 2023
    Review
  6. Article
  7. Review
  8. Combined Protein and Alkaloid Research ofInternational journal of molecular sciences · 2021
    Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Plant-Made Bet v 1 for Molecular Diagnosis.Frontiers in plant science · 2019
    Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Recombinant Allergens in Structural Biology, Diagnosis, and Immunotherapy.International archives of allergy and immunology · 2017
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 4 countries.

Maksymilian ChruszczDepartment of Chemistry and Biochemistry, University of South Carolina, 631 Sumter Street, Columbia, SC 29208, USA; Department of Molecular Physiology and Biological Physics, University of Virginia, 1340 Jefferson Park Avenue, Charlottesville, VA 22908, USA. Electronic address: chruszcz@mailbox.sc.edu.
Maria Antonietta Ciardiello
Tomasz Osinski
Karolina A Majorek
Ivana Giangrieco
Jose Font
Heimo Breiteneder
Konstantinos Thalassinos
Wladek Minor
University of Virginia · USInstitute of Protein Biochemistry · ITMedical University of Vienna · ATUniversity College London · GB

Funding

X-RAY CRYSTALLOGRAPHY OF MACROMOLECULESR01GM053163 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI MINOR, WLADEK, OTWINOWSKI, ZBYSZEK · 1996 to 2014
$6.3M
NIGMS NIH HHS GM53163NIGMS NIH HHS R01 GM053163
6 · The paper itself

Abstract

The allergen Act d 11, also known as kirola, is a 17 kDa protein expressed in large amounts in ripe green and yellow-fleshed kiwifruit. Ten percent of all kiwifruit-allergic individuals produce IgE specific for the protein. Using X-ray crystallography, we determined the first three-dimensional structures of Act d 11, produced from both recombinant expression in Escherichia coli and from the natural source (kiwifruit). While Act d 11 is immunologically correlated with the birch pollen allergen Bet v 1 and other members of the pathogenesis-related protein family 10 (PR-10), it has low sequence similarity to PR-10 proteins. By sequence Act d 11 appears instead to belong to the major latex/ripening-related (MLP/RRP) family, but analysis of the crystal structures shows that Act d 11 has a fold very similar to that of Bet v 1 and other PR-10 related allergens regardless of the low sequence identity. The structures of both the natural and recombinant protein include an unidentified ligand, which is relatively small (about 250 Da by mass spectrometry experiments) and most likely contains an aromatic ring. The ligand-binding cavity in Act d 11 is also significantly smaller than those in PR-10 proteins. The binding of the ligand, which we were not able to unambiguously identify, results in conformational changes in the protein that may have physiological and immunological implications. Interestingly, the residue corresponding to Glu45 in Bet v 1 (Glu46), which is important for IgE binding to the birch pollen allergen, is conserved in Act d 11, even though it is not in other allergens with significantly higher sequence identity to Bet v 1. We suggest that the so-called Gly-rich loop (or P-loop), which is conserved in all PR-10 allergens, may be responsible for IgE cross-reactivity between Bet v 1 and Act d 11.

Indexed as

ActinidiaAllergensAmino Acid SequenceAntigens, PlantComputational BiologyFruitHumansModels, MolecularMolecular Sequence DataPlant ProteinsProtein BindingProtein Structure, SecondaryProtein Structure, TertiaryRecombinant ProteinsSequence Homology, Amino AcidSerotoninAct d 4 allergen, Actinidia deliciosaAllergensAntigens, PlantPlant ProteinsRecombinant ProteinsSerotoninAct d 11AllergenBet v 1Food allergyKirolaKiwifruitmajor latex proteinMLPpathogenesis-related proteins family 10PDBPR-10Protein Data Bankripening related proteinRMSDroot mean square deviationRRP

Identifiers

PMID23969108
PMCPMC3783527
OpenAlexW2010984913

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.